New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3388557	4 (0.430)	4 (0.430)	3/264	0.6	57.1%	coding (501/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 5354541	2 (0.210)					coding (2018/2937 nt)	PP_4704	hypothetical protein

AGGGCAAGGTAGACCGCTACGCACCGGTTACCATCAAGGGCGCACTCAACCCGTTCAACCCACTGGCCAGCCTGGACATTGCCACCAGCTTCAAGCGCGTCGAATTGACCACGCTGACGCCCTACTCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGAACCTGGACCTGCACTATCTGATCACCAACGGCCAACTCAAGGCCGAGAACAAGGTAGTAGTGGAGCAACTGCAG  >  NC_002947/5354415‑5354656                                                                                                                               |                                                                                                                    atcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTACTCCGGCAAGtt                                                                                                            <  1:212358‑M2/14‑1 (MQ=255)         gTAGACCGCTACGCACCGGTTACCATCAAGGGCGCACTCAACCCGTTCAACCCACTGGCCAGCCTGGACATTGCCACCAGCTTCAAGCGCGTCGAATTGACCACGCTGACGCCCTACTCggggtcatgccgagata                                                                                                    <  1:24004‑M2/136‑18 (MQ=255)            cggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTACTCCGGCAAGTTCGCCGGCTtcc                                                                                                 <  2:144353‑M2/25‑1 (MQ=255)            cggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTACTCCGGCAAGTTCACCGGCTtcc                                                                                                 <  1:53439‑M2/25‑1 (MQ=255)                   ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTACTCCGGCAAGTTCGCCGGCTtccgcatccg                                                                                          >  1:193229‑M2/105‑136 (MQ=255)                                 accagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTACTCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGa                                                                            <  2:193229‑M2/46‑1 (MQ=255)                                                         aaCCCACTGGCCAGCCTGGACATTGCCACCAGCTTCAAGCGCGTCGAATTGACCACGCTGACGCCCTACTCggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgag                                                    <  1:232826‑M2/136‑66 (MQ=255)                                                               tttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTACTCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGAACCTGGACCTGCACTATCTGATCACCAACg                                              >  2:180905‑M2/61‑136 (MQ=255)                                                                   ccAGCCTGGACATTGCCACCAGCTTCAAGCGCGTCGAATTGACCACGCTGACGCCCTACTCggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaa                                          >  1:126948‑M2/1‑61 (MQ=255)                                                                   ccAGCCTGGACATTGCCAACAGCTTCAAGCGCGTCGAATTGACCACGCTGACGCCCTACTCggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaa                                          >  2:130033‑M2/1‑61 (MQ=255)                                                                                                                              tCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGAACCTGGACCTGCACTATCTGATCACCAACGGCCAACTCAAGGCCGAGAACAAGGTAGTAGTGGAGCAACTGCAg  >  1:199306/1‑117 (MQ=255)                                                                                                                              tCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGAACCTGGACCTGCACTATCTGATCACCAACGGCCAACTCAAGGCCGAGAACAAGGTAGTAGTGGAGCAACTGCAg  <  2:199306/117‑1 (MQ=255)                                                                                                                               |                                                                                                                    AGGGCAAGGTAGACCGCTACGCACCGGTTACCATCAAGGGCGCACTCAACCCGTTCAACCCACTGGCCAGCCTGGACATTGCCACCAGCTTCAAGCGCGTCGAATTGACCACGCTGACGCCCTACTCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGAACCTGGACCTGCACTATCTGATCACCAACGGCCAACTCAAGGCCGAGAACAAGGTAGTAGTGGAGCAACTGCAG  >  NC_002947/5354415‑5354656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.