New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 652786	13 (1.390)	31 (4.510)	8/194	0.1	86.7%	coding (1960/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	4813203 =	0 (0.000)					intergenic (‑318/‑237)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

ACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCT  >  NC_002947/652654‑652909                                                                                                                                     |                                                                                                                            aCAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGCTCTCAgtc                                                                                                                          >  2:173996/1‑134 (MQ=255)  cAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGAcc                                                                                                                         <  1:224583/136‑1 (MQ=255)                                                        gcgcAGGAATAATTGGCCCGAAACAACCGTCGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCa                                                                   <  2:46936/136‑1 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcaggcgctgaaactctcccggcga                                                                                                     >  2:150637‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcaggcgctgaaactctcccggcga                                                                                                     <  1:150637‑M1/94‑25 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgc                                                           >  1:121257‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                         <  1:11262‑M1/74‑5 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                         >  2:136009‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                         >  2:11262‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                         <  2:192027‑M1/74‑5 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                         >  2:192905‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                         <  1:244248‑M1/74‑5 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                         <  1:192905‑M1/74‑5 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                         >  1:192027‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                         >  2:244248‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                         <  1:136009‑M1/74‑5 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcag                                                                                                                          >  2:4808‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcag                                                                                                                          <  1:4808‑M1/73‑4 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtcccctcaaaattccaacgc                                                           >  1:138703‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgc                                                           >  2:222157‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgc                                                           >  2:160466‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaataccaacgc                                                           >  1:100269‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggc                                                                                                                        >  2:233288‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggc                                                                                                                        <  1:233288‑M1/75‑6 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcag                                                                                                                          <  1:149659‑M1/73‑4 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcag                                                                                                                          >  2:149659‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCCCGGGCGGCGCTCCATCTCAcaggcgctgaaaatcctccggcaaacaccacaaaattccaacgcccaccactcaaaaatccaacgc                                                           >  1:140162‑M1/1‑70 (MQ=255)                                                                  aatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccg                                                         <  1:160466‑M1/136‑69 (MQ=255)                                                                  aatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                         <  2:53386‑M1/72‑5 (MQ=255)                                                                  aatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                         >  1:53386‑M1/1‑68 (MQ=255)                                                                   atTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgc                                                        <  1:219872‑M1/136‑70 (MQ=255)                                                                   atTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTca                                                                              <  2:167929/114‑1 (MQ=255)                                                                   atTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTca                                                                              >  1:167929/1‑114 (MQ=255)                                                                           gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGc                                                >  1:217944/1‑136 (MQ=255)                                                                            aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaac                                                                                                                <  2:187945‑M1/71‑14 (MQ=255)                                                                            aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaac                                                                                                                >  1:187945‑M1/1‑58 (MQ=255)                                                                                          gCGGGTTTACCCGCGAAGCGCCGCGCCGGCGGCCCTCGATCTCAGACCCTGCACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCCGCCGCTGTTGACCCTGTTTTCGCCCCGCGCCACTGCGGGGCAGGt                                 >  2:143388/1‑136 (MQ=37)                                                                                              gTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCAGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTc                             >  2:213761/1‑136 (MQ=255)                                                                                                ttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattacaacgccgtccacgcaaaattccaacgccgccccctcaaaaatccaacgccgccgccccg                           >  1:46578‑M1/1‑38 (MQ=255)                                                                                                 tACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCCCCGCCCACGCTCAGCAGCGGTTCCCCCTGTTTACGCCCCTCCCCAAAGCACTGCAGGTTGTCTTc                          >  2:127828/1‑136 (MQ=38)                                                                                                 tACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTc                          >  2:136749/1‑136 (MQ=255)                                                                                                 tACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTc                          >  1:136015/1‑136 (MQ=255)                                                                                                                gcgcgGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgccccctcaaaattccaacgccgcctcccctcgaaaatccaacaaca           <  2:138703‑M1/136‑115 (MQ=255)                                                                                                                    gggcggCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgc       <  2:217944/136‑1 (MQ=255)                                                                                                                         gcgcTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgctcgct  <  1:173996/136‑1 (MQ=255)                                                                                                                                     |                                                                                                                            ACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCT  >  NC_002947/652654‑652909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.