| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 652786 | 13 (1.390) | 31 (4.510) | 8/194 | 0.1 | 86.7% | coding (1960/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | 4813203 = | 0 (0.000) | intergenic (‑318/‑237) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
CGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACA > NC_002947/4813133‑4813316 | ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg < 1:11262‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg < 1:136009‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg > 2:244248‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg > 2:192905‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg < 2:192027‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg > 2:136009‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg > 2:11262‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg < 1:244248‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg > 1:192027‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg < 1:192905‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAg < 1:4808‑M2/3‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAg > 2:4808‑M2/71‑73 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAGGCGCTGAAACTCTCCCggcga > 2:150637‑M2/71‑92 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAGGCGCTGAAACTCTCCCggcga < 1:150637‑M2/24‑3 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 1:121257‑M2/71‑136 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAg < 1:149659‑M2/3‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAg > 2:149659‑M2/71‑73 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGgc < 1:233288‑M2/5‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGgc > 2:233288‑M2/71‑75 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCCCTCAAAATTCCAAcgc > 1:138703‑M2/71‑136 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 2:160466‑M2/71‑136 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 2:222157‑M2/71‑136 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATACCAAcgc > 1:100269‑M2/71‑136 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcccgggcggcgctccatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCACAAAATTCCAACGCCCACCACTCAAAAATCCAAcgc > 1:140162‑M2/71‑136 (MQ=255) aattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 1:53386‑M2/69‑72 (MQ=255) aattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 2:53386‑M2/4‑1 (MQ=255) aattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgccg < 1:160466‑M2/68‑1 (MQ=255) attggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgccgc < 1:219872‑M2/69‑1 (MQ=255) aaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTgaaac < 2:187945‑M2/13‑2 (MQ=255) aaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTgaaac > 1:187945‑M2/59‑70 (MQ=255) ttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTACAACGCCGTCCACGCAAAATTCCAACGCCGCCCCCTCAAAAATCCAACGCCGCCgccccg > 1:46578‑M2/39‑135 (MQ=255) gcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaacaaca < 2:138703‑M2/114‑1 (MQ=255) | CGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACA > NC_002947/4813133‑4813316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |