New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	744925 =	NA (NA)	8 (0.860)	6/262	0.3	100%	intergenic (‑587/+44)	PP_0636/PP_0637	cold shock DNA‑binding domain‑containing protein/transposase
	?	NC_002947	1015813 =	0 (0.000)					intergenic (‑40/‑728)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3

TTATCAAGAATGATGACATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAA  >  NC_002947/1015679‑1015948                                                                                                                                       |                                                                                                                                        cacgtcctggagcgactgccgcacgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCa                                                                                                                                        >  1:168566‑M2/135‑136 (MQ=255)                  gccgcacgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGaaaa                                                                                                                       >  1:102918‑M2/118‑136 (MQ=255)                       acgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGtgtg                                                                                                                  <  2:168566‑M2/24‑1 (MQ=255)                           ctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaacttaggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACAt                                                                                                              >  1:9365‑M2/109‑136 (MQ=255)                                                 gTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctga                                                                                        <  2:180302‑M2/136‑41 (MQ=255)                                                        tgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACaa                                                                                 >  1:138562‑M2/80‑136 (MQ=255)                                                                     gCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccg                                                                    <  2:207055‑M2/136‑61 (MQ=255)                                                                                         aactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGa                                                <  2:9957‑M2/90‑1 (MQ=255)                                                                                         aactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGa                                                <  2:190994‑M2/90‑1 (MQ=255)                                                                                                                    tGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgatccccgatgctgtgctcccgatttctttctggagctcgccgaccatgatgcgacccgacgccaaagt                     >  1:107077‑M2/1‑29 (MQ=255)                                                                                                                      gTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcg                   <  1:157662‑M2/136‑110 (MQ=255)                                                                                                                      gTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcg                   <  2:233546‑M2/136‑110 (MQ=255)                                                                                                                                 ccATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctac        >  1:207055‑M2/1‑16 (MQ=255)                                                                                                                                   gttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTg      >  2:60370‑M2/5‑136 (MQ=255)                                                                                                                                    tAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaa              <  1:242807‑M2/127‑115 (MQ=255)                                                                                                                                    tAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaa              <  1:199564‑M2/127‑115 (MQ=255)                                                                                                                                    tAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaa              >  2:199564‑M2/1‑13 (MQ=255)                                                                                                                                    tAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaa              >  2:242807‑M2/1‑13 (MQ=255)                                                                                                                                       CATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGaaaa  >  2:64100‑M2/1‑136 (MQ=255)                                                                                                                                       |                                                                                                                                        TTATCAAGAATGATGACATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAA  >  NC_002947/1015679‑1015948

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.