Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	4986770	4986943	174	2 [1]	[1] 2	flgE	flagellar hook protein FlgE

CGCACGGGTGTAGATCTTCGAGCCGTTGTCGTTCAGGGCAAAGAAGCCGTTGCCATCGATAGCCATGTCCAGCGCCTGGCCGGTGGCGTTGATATTGCCTGGCGTGAACAGCTGCGACACCGCGGCAGTCTTTACCCCGGTGCCGATCACGGTCTTGCCCGCGCTGGTGCCGCGAATGGAGTTGGAGTACTGGTCGGCGAACTCGGCACGCGACGACTTGAAGCCGGTGGT  >  NC_002947/4986634‑4986864                                                                                                                                        |                                                                                                cGCACGGGTGTAGATCTTCGAGCCGTTGTCGTTCAGGGCAAAGAAGCCGTTGCCATCGATAGCCATGTCCAGCGCCTGGCCGGTGGCGTTGATATTGCCTGGCGTGAACAGCTGCGACACCGCGGCAGTCTTTAcc                                                                                                 >  1:34767/1‑136 (MQ=255)                                                                                                tGCCTGGCGTGAACAGCTGCGACACCGCGGCAGTCTTTACCCCGGTGCCGATCACGGTCTTGCCCGGGCTGGTGCCGCGAATGGAGTTGGAGTACTGGTCGGCGAACTCGGCACGCGACGACTTGAAGCCggtggt  <  2:47309/136‑1 (MQ=255)                                                                                                                                        |                                                                                                CGCACGGGTGTAGATCTTCGAGCCGTTGTCGTTCAGGGCAAAGAAGCCGTTGCCATCGATAGCCATGTCCAGCGCCTGGCCGGTGGCGTTGATATTGCCTGGCGTGAACAGCTGCGACACCGCGGCAGTCTTTACCCCGGTGCCGATCACGGTCTTGCCCGCGCTGGTGCCGCGAATGGAGTTGGAGTACTGGTCGGCGAACTCGGCACGCGACGACTTGAAGCCGGTGGT  >  NC_002947/4986634‑4986864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑