New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	533500 =	5 (0.250)	4 (0.220)	4/238	1.1	45.7%	coding (762/1194 nt)	tufA	elongation factor Tu‑A
	?	NC_002947	= 533496	5 (0.270)					coding (758/1194 nt)	tufA	elongation factor Tu‑A

TTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTGACGACGTTGA  >  NC_002947/533378‑533610                                                                                                                           |                                                                                                               ttCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACaccaccaccaccacca                                                                                                   >  1:365601/1‑135 (MQ=17)                            tcGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAgc                                                                        <  1:316111/136‑1 (MQ=32)                                tctcGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAgctgct                                                                    <  2:396428/136‑1 (MQ=32)                                                   tgttACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCA‑CACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCg                                                >  2:10112/1‑136 (MQ=17)                                                        ttaccggtcgtatcgagcgtggcatcgtccgcgttcaggatccgctggaaatcgttggtctgcgtgaCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGaa                                            <  2:325182‑M1/69‑1 (MQ=255)                                                                  tatcgagcgtggcatcgtccgcgttcaggatccgctggaaatcgttggtctgcgtgaCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGtt                                  <  2:109521‑M1/79‑1 (MQ=255)                                                                     cgagcgtggcatcgttcgcgttcaggatccgctggaaatcgttggtctgcgtgaCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTctg                               <  2:244776‑M1/82‑1 (MQ=255)                                                                      cGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCA‑CACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTctgct                             <  1:10112/136‑1 (MQ=17)                                                                                                  cgctggaaatcgttggtctgcgtgaCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTGACGACGTTGa  >  1:244776‑M1/26‑136 (MQ=255)                                                                                                                           CACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTc                                                         >  1:117229‑M1/1‑56 (MQ=255)                                                                                                                           CACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTc                                                         <  2:117229‑M1/56‑1 (MQ=255)                                                                                                                           |                                                                                                               TTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTGACGACGTTGA  >  NC_002947/533378‑533610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.