New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	533500 =	5 (0.250)	4 (0.220)	4/238	1.1	45.7%	coding (762/1194 nt)	tufA	elongation factor Tu‑A
	?	NC_002947	= 533496	5 (0.270)					coding (758/1194 nt)	tufA	elongation factor Tu‑A

TTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTGACGACGT  >  NC_002947/533378‑533607                                                                                                                       |                                                                                                                ttCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACaccaccaccaccacca                                                                                                >  1:365601/1‑135 (MQ=17)                            tcGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAgc                                                                     <  1:316111/136‑1 (MQ=32)                                tctcGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAgctgct                                                                 <  2:396428/136‑1 (MQ=32)                                                   tgttACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCA‑CACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCg                                             >  2:10112/1‑136 (MQ=17)                                                     ttACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGAcaccaccaccacctgcaccggtgttgagatgttccgcaagctgctggacgaaggtcgtgctggcgagaa                                            <  2:325182‑M2/136‑70 (MQ=255)                                                               tATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGAcaccaccaccacctgcaccggtgttgagatgttccgcaagctgctggacgaaggtcgtgctggcgagaactgcggcgtt                                  <  2:109521‑M2/136‑80 (MQ=255)                                                                  cGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGAcaccaccaccacctgcaccggtgttgagatgttccgcaagctgctggacgaaggtcgtgctggcgagaactgcggcgttctg                               <  2:244776‑M2/136‑83 (MQ=255)                                                                      cGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCA‑CACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTctgct                          <  1:10112/136‑1 (MQ=17)                                                                                               cGCTGGAAATCGTTGGTCTGCGTGAcaccaccaccacctgcaccggtgttgagatgttccgcaagctgctggacgaaggtcgtgctggcgagaactgcggcgttctgctgcgtggtaccaagcgtgacgacgttga  >  1:244776‑M2/1‑25 (MQ=255)                                                                                                                       |                                                                                                                TTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTGACGACGT  >  NC_002947/533378‑533607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.