New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 746963	NA (NA)	14 (0.700)	11/262	0.4	77.9%	intergenic (‑87/‑707)	PP_0638/PP_5448	transposase/hypothetical protein
	?	NC_002947	= 1015822	4 (0.200)					intergenic (‑49/‑719)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3

AGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACC  >  NC_002947/746842‑747095                                                                                                                          |                                                                                                                                     aggtagaCTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGTCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGCGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCACTTACGCTTAGAAAAccc                                                                                                                        >  2:284591/1‑136 (MQ=255) aggtagaCTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAAccc                                                                                                                        >  2:357581/1‑136 (MQ=40) aggtagaCTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAAccc                                                                                                                        >  2:304519/1‑136 (MQ=40)                          cGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCg                                                                                               <  2:207430/136‑1 (MQ=255)                           ggggCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGt                                                                                              <  2:319818/136‑1 (MQ=255)                                   tcatGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTc                                                                                      <  1:232685/136‑1 (MQ=255)                                        gCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAAcc                                                                                 <  1:406322/136‑1 (MQ=255)                                            gctggctCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCa                                                                             <  2:55363/136‑1 (MQ=255)                                                                   aGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATc                                                      <  2:265513/136‑1 (MQ=255)                                                                        aGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCa                                                 >  1:203156/1‑136 (MQ=255)                                                                                     aGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTgaga                                    >  1:463466/1‑136 (MQ=255)                                                                                     aGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTgaga                                    >  2:380808/1‑136 (MQ=255)                                                                                       gTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGAtt                                  >  1:157900/1‑136 (MQ=255)                                                                                                        ggggATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGt                 <  2:463466/136‑1 (MQ=255)                                                                                                                    tCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGggcggc     <  1:357581/136‑1 (MQ=255)                                                                                                                    tCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGggcggc     <  1:304519/136‑1 (MQ=255)                                                                                                                    ccccTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGggcggc     <  1:284591/135‑1 (MQ=255)                                                                                                                       cTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCacc  <  2:188397/136‑1 (MQ=255)                                                                                                                          |                                                                                                                                     AGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACC  >  NC_002947/746842‑747095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.