| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 746963 | NA (NA) | 14 (0.700) | 11/262 | 0.4 | 77.9% | intergenic (‑87/‑707) | PP_0638/PP_5448 | transposase/hypothetical protein |
| ? | NC_002947 | = 1015822 | 4 (0.200) | intergenic (‑49/‑719) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 | |||||
TGACATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGG > NC_002947/1015692‑1015957 | tgaCATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagg < 1:58043‑M2/136‑6 (MQ=255) gccgcacgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGaaaa > 2:295615‑M2/118‑136 (MQ=255) catGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatcca > 2:58043‑M2/1‑125 (MQ=255) acgcctcatcggtagcagactacgaagcgctgctgccatggaactgttcgccagtgatgccacggtaactttggcttccaccttgtggtaggtggggttgatggatcggttaCTTAACATAGTTGCGAAAAGtgtg < 1:60515‑M2/24‑1 (MQ=255) catcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATgg > 1:171088‑M2/107‑136 (MQ=255) atcggtagcagactacgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGa > 2:311186‑M2/106‑136 (MQ=255) tGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGaa > 2:253544/1‑136 (MQ=255) acgaagcgctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGaa > 1:471375‑M2/92‑136 (MQ=255) gctgctgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTa < 2:332740‑M2/52‑1 (MQ=255) aTGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgatt < 2:31265‑M2/136‑43 (MQ=255) tgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACaa > 1:53082‑M2/80‑136 (MQ=255) tgccatggaactgttcgccagagatgccacggtaactttggcttccaccttgtggtaggtggggatcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACaa > 1:158193‑M2/80‑136 (MQ=255) ccagagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGtttttt < 1:508200‑M2/74‑1 (MQ=255) agagatgccacggtaactttggcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTAt < 1:336936‑M2/76‑1 (MQ=255) cAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTa < 1:253544/136‑1 (MQ=255) gcttccaccttgtggtaggtggggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATaaa < 1:455797‑M2/97‑1 (MQ=255) gggttcatggatcggttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGAtt > 2:269998‑M2/19‑136 (MQ=255) gTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcg < 2:122964‑M2/136‑110 (MQ=255) gTATGAAATAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcg > 1:122964‑M2/1‑27 (MQ=255) aaTAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgat > 2:333300‑M2/1‑21 (MQ=255) aaTAACCATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgat < 1:333300‑M2/62‑42 (MQ=255) ccATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctac > 1:134256‑M2/1‑16 (MQ=255) ccATAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctac > 1:80711‑M2/1‑16 (MQ=255) gttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAGGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATctt > 2:440734‑M2/5‑135 (MQ=255) gttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTg > 2:284807‑M2/5‑136 (MQ=255) gttaCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTg > 2:116003‑M2/5‑136 (MQ=255) tAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctacctc < 2:175893‑M2/136‑124 (MQ=255) tAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctacctc < 2:11001‑M2/136‑124 (MQ=255) tAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctacctc < 2:450209‑M2/136‑124 (MQ=255) tAGCATAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctacctc > 1:217490‑M2/1‑13 (MQ=255) aTAACAAAGtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctacctctacc > 1:371140‑M2/1‑9 (MQ=255) tAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGaaaaaa < 2:250596/136‑1 (MQ=255) gtaagggatccatcatccccacattccaaccgtccacctgattcccgatgctgtgctcccgatttctttctggagccagcccgccatgatgcgccccgacagcaaagtcgaaaaagtctacctctaccccaagccc > 1:350775‑M2/1‑1 (MQ=255) gATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCgg > 2:489859/1‑136 (MQ=255) | TGACATCATGACCGTTTTGCAGTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGG > NC_002947/1015692‑1015957 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |