New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1337382	240 (0.990)	9 (0.050) +AGGCCGGCGCCGTCTTTTTGCCGGCGCGGCCTGGTGC	7/200	NT	5.1%	intergenic (+8/‑1248)	PP_1157/PP_1159	acetolactate synthase/membrane protein
	?	NC_002947	3812946 =	215 (0.890)					intergenic (+26/+101)	PP_3364/PP_3365	two‑component system response regulator/acetolactate synthase

TACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1337315‑1337382 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGG  >  NC_002947/3812946‑3813009                                                                     |||||||||||||||||||||||||||||||||||||                                                                 TACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCCCTGGCGGTGTAAGCCCTGACAGGCCGGCGCCGTCTTTTTGCCGGCGCGGCCTGGTGCTGCAAAGAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGG                     <  2:91476/150‑1   CAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCCCTGGCGGTGTAAGCCCTGACAGGCCGGCGCCGTCTTTTTGCCGGCGCGGCCTGGTGCTGCAAAGAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGC                   <  1:2663182/150‑1   CAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCCCTGGCGGTGTAAGCCCTGACAGGCCGGCGCCGTCTTTTTGCCGGCGCGGCCTGGTGCTGCAAAGAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGC                   <  1:2663207/150‑1        AGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCCCTGGCGGTGTAAGCCCTGACAGGCCGGCGCCGTCTTTTTGCCGGCGCGGCCTGGTGCTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGC                   <  1:994670/145‑1        AGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCCCTGGCGGTGTAAGCCCTGACAGGCCGGCGCCGTCTTTTTGCCGGCGCGGCCTGGTGCTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGC                   >  2:994670/1‑145          AACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCCCTGGCGGTGTAAGCCCTGACAGGCCGGCGCCGTCTTTTTGCCGGCGCGGCCTGGTGCTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTG            <  1:4780082/150‑1                    TCCTCAACAGCGAGCTGCGTGAGCGCGCCCTGGCGGTGTAAGCCCTGACAGGCCGGCGCCGTCTTTTTGCCGGCGCGGCCTGGTGCTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGG  <  1:3349188/150‑1                                                           AAGCCCTGACAGGCCGGCGCCGTCTTTTTGCCGGCGCGGCCTGGTGCTGCAAAGAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGC           <  1:4785290/102‑1                                                           AAGCCCTGACAGGCCGGCGCCGTCTTTTTGCCGGCGCGGCCTGGTGCTGCAAAGAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGC           >  2:4785290/1‑102                                                                     |||||||||||||||||||||||||||||||||||||                                                                 TACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1337315‑1337382 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGG  >  NC_002947/3812946‑3813009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.