New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1436670	265 (1.100)	16 (0.070)	10/262	NT	5.6%	coding (158/336 nt)	PP_1253	ArsR family transcriptional regulator
	?	NC_002947	= 1436695	286 (1.240)					coding (133/336 nt)	PP_1253	ArsR family transcriptional regulator

CAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1436516‑1436670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgc‑‑cac‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGAGGTCGGCCGAAGTCGAGCATGTCCCACCACTTCCGTGTGTTGCGTGATGCAGGGCTGGTGCAAACCCGCAATGTGGGGACTACCCATATGAATTCGCTGCGTAGCGA  <  NC_002947/1436695‑1436547                                                                                                                                                                                                                                                                                                                      CAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTC                                                                                                                                                                <  2:2413220/150‑1 CAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTC                                                                                                                                                                <  2:2412681/150‑1 CAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTC                                                                                                                                                                <  2:242186/150‑1 CAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTC                                                                                                                                                                <  2:2413229/150‑1 CAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACAGTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTC                                                                                                                                                                <  2:3057977/150‑1  AGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCG                                                                                                                                                               >  2:4058637/1‑150   GCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC                                                                                                                                                              >  2:171486/1‑150   GCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC                                                                                                                                                              >  2:171678/1‑150      GCCCGGGAAACCGCTCGCCCAGCATCTCTCTAAGCAGCGACTTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGCCTTCGGCCGACCTCCCTCCAGCTCGC‑‑CAC                                                                                                                                                         >  2:3395125/1‑150                               CTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CACAGCTGGCCGGCGTGGCCGAGGCCAG                                                                                                                                <  2:3257599/150‑1                                   CTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGT                                                                                                                            <  1:5160343/150‑1                                   CTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGT                                                                                                                            <  1:645728/150‑1                                      CGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGA                                                                                                                       <  1:4275368/150‑1                                      CGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGA                                                                                                                       <  1:4460891/150‑1                                      CGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGA                                                                                                                       <  2:5160456/150‑1                                      CGCAGCGAATTCATATGGGTAGACCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACCCGGAAGTGGTGGGACATGCACGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGA                                                                                                                       <  1:2174358/150‑1                                       GCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACCCGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAG                                                                                                                      <  2:3637613/150‑1                                       GCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAG                                                                                                                      <  2:809271/150‑1                                        CAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGC                                                                                                                     <  1:2431159/150‑1                                         AGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCCCGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCAAGCT                                                                                                                    <  2:5585509/150‑1                                                TCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGA                                                                                                             <  1:1765185/150‑1                                                   gATGGGGAGTCCCCACCGTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGAG                                                                                                            <  2:3530901/149‑1                                                        GTAGTCCCCACATTGCGGGTTTGCACCCGCCCTGCATCCCGCAACACACGGACGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGAGGTCGGCC                                                                                                     <  2:1347868/150‑1                                                                                                                           TCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGA                                                                                                                       >  2:4251305/1‑65                                                                                                                           TCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGA                                                                                                                       <  1:4251305/65‑1                                                                                                                                                      CGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGAGGTCGGCCGAAGTCGAGCATGTCCCACCACTTCCGTGTGTTGCGTGATGCAGGGCTGGTGCAAACCCGCAATGTGGGGACTACCCATATGAATTCGCTGCGT       <  1:5610463/150‑1                                                                                                                                                      CGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGAGGTCGGCCGAAGTCGAGCATGTCCCACCACTTCCGTGTGTTGCGTGATGCAGGGCTGGTGCAAACCCGCAATGTGGGGACTACCCATATGAATTCGCTGCGT       >  2:4220488/1‑150                                                                                                                                                      CGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGAGGTCGGCCGAAGTCGAGCATGTCCCACCACTTCCGTGTGTTGCGTGATGCAGGGCTGGTGCAAACCCGCAATGTGGGGACTACCCATATGAATTCGCTGCGT       >  1:1570904/1‑150                                                                                                                                                      CGC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGAGGTCGGCCGAAGTCGAGCATGTCCCACCACTTCCGTGTGTTGCGTGATGCAGGGCTGGTGCAAACCCGCAATGTGGGGACTACCCATATGAATTCGCTGCGT       >  2:976150/1‑150                                                                                                                                                       GC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGAGGTCGGCCGAAGTCGAGCATGTCCCACCACTTCCGTGTGTTGCGTGATGCAGGGCTGGTGCAAACCCGCAATGTGGGGACTACCCATATGAATTCGCTGCGTA      <  1:4548991/150‑1                                                                                                                                                       GC‑‑CAC‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGAGGTCGGCCGAAGTCGAGCATGTCCCACCACTTCCGTGTGTTGCGTGATGCAGGGCTGGTGCAAACCCGCAATGTGGGGACTACCCATATGAATTCGCTGCGTA      >  1:422650/1‑150                                                                                                                                                             C‑‑CTGGCCGGCGTGGCCGATGCCAGCTGTTGCGAGCTGGATGGAGGTCGGCCGAAGTCGAGCATGTCCCACCACTTCAGTGTGTTGCGTGATGCAGGGCTTGTGCAAACCCGCAATGTTGGGACTACCCATATGAATTCGCTGCGTAGCGA  <  2:3684007/150‑1                                                                                                                                                             C‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGAGGTCGGCCGAAGTCGAGCATGTCCCACCACTTCCGTGTGTTGCGTGATGCAGGGCTGGTGCAAACCCGCAATGTGGGGACTACCCATATGAATTCGCTGCGTAGCGA  <  2:3064672/150‑1                                                                                                                                                             C‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGAGGTCGGCCGAAGTCGAGCATGTCCCACCACGTCCGTGTGTTGCGTGATGCAGGGCTGGTGCAAACCCGCAATGTGGGGACTACCCATATGAATTCGCTGCGTAGCGA  <  2:4658490/150‑1                                                                                                                                                                                                                                                                                                                      CAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGC‑‑CAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1436516‑1436670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgc‑‑cac‑‑CTGGCCGGCGTGGCCGAGGCCAGCTGTGGCGAGCTGGATGGAGGTCGGCCGAAGTCGAGCATGTCCCACCACTTCCGTGTGTTGCGTGATGCAGGGCTGGTGCAAACCCGCAATGTGGGGACTACCCATATGAATTCGCTGCGTAGCGA  <  NC_002947/1436695‑1436547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.