| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4582816 = | 220 (0.910) | 23 (0.100) | 12/262 | NT | 10.3% | intergenic (+32/+77) | PP_4057/glgB | membrane protein/1,4‑alpha‑glucan branching enzyme |
| ? | NC_002947 | 4582856 = | 189 (0.820) | intergenic (+72/+37) | PP_4057/glgB | membrane protein/1,4‑alpha‑glucan branching enzyme | |||||
GTGGCCAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4582970‑4582816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggaACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGAC > NC_002947/4582856‑4583003 GTGGCCAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTG < 2:2426628/150‑1 TGGCCAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGT > 1:5154147/1‑150 TGGCCAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGT < 1:3861968/150‑1 GGCCAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTA < 2:3724052/150‑1 GGCCAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTA > 1:5500623/1‑150 GCCAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAG < 2:4628311/150‑1 GCCAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAG > 1:3189425/1‑150 GCCAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAG < 1:4312083/150‑1 CAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGA < 1:4924844/150‑1 CAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGA < 1:2134098/150‑1 CAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGA < 1:4349759/150‑1 ATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTG‑CCTGCGTAGGAACGGGTCC‑CCCGCGAAAG < 2:1953208/150‑1 GTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGATCGGGTTTACCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACTCCCCCAACGGCGGCA > 2:2936546/1‑150 CTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTTT‑ACCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCC > 2:4453980/1‑150 CCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCCCTGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGT > 1:3812887/1‑150 CCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGT > 1:407040/1‑150 CCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTG > 1:1454448/1‑150 CCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTG > 1:888280/1‑150 CCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTG > 2:2983305/1‑150 CCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTG > 2:4611801/1‑150 CCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTG > 2:753594/1‑150 CCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTG > 1:880514/1‑150 CCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTG > 1:1657911/1‑150 CCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCA < 1:180749/131‑1 CCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCA > 2:180749/1‑131 GTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGG > 2:1443888/1‑150 CTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGC > 1:2660321/1‑150 TACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGC > 2:5198264/1‑150 CGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAGAGGGTTTACCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTGCATGATCAACACCCCCAACAGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCA > 1:382603/1‑150 CAGG‑CACCGCACCCGGCGGTG‑CCTGCGGAGGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCATCGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTC > 1:2733713/1‑150 AGG‑CACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTT > 1:440413/1‑150 AGG‑CACCGCACCCGGCGGTG‑CCTGCGTAGGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCG > 2:1281378/1‑150 GG‑CACCGCACCCGGCGGTG‑CCTGCGTAGGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGT > 1:453693/1‑150 ACCCGGCGGTGACCCGCGTAGGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGC > 2:1065492/1‑150 TAGGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCC < 2:1179820/150‑1 TAGGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCC < 1:4925084/150‑1 GGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGA > 2:4902009/1‑150 GGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGA > 1:4794811/1‑150 GGAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGA < 1:3090706/150‑1 GAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCATCACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGAC > 2:5465973/1‑150 GAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGAC > 1:2663913/1‑150 GAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGAC > 2:3049626/1‑150 GAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGAC > 2:2705875/1‑150 GAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGAC > 1:3893002/1‑150 GAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGAC > 1:541830/1‑150 GAACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGAC > 1:1064783/1‑150 GTGGCCAGCCACGGGCAGCCATTATCGCTGGCCCTGAACCTGCCGCCGTTGGGGGTGTTGATCATGAAGCCCGCCTGATCGGTTGGCTGTACTGGCCCTTTCGCGGGAGACCCGTTCCTACGCAGG‑CACCGCACCCGGCGGTGACCCGTGTAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4582970‑4582816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggaACGGGTCT‑CCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGAC > NC_002947/4582856‑4583003 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |