| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 86765 | 136 (0.690) | 13 (0.070) | 5/244 | NT | 9.6% | intergenic (‑48/+97) | PP_0075/PP_0076 | choline sulfate transporter/choline betaine‑binding protein |
| ? | NC_002947 | = 86824 | 125 (0.720) | intergenic (‑107/+38) | PP_0075/PP_0076 | choline sulfate transporter/choline betaine‑binding protein | |||||
CGGCAGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/86604‑86765‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggcGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCACCTGGCT < NC_002947/86824‑86677 CGGCAGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCT < 1:103604/150‑1CGGCAGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCT < 2:2624639/150‑1CGGCAGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCT < 1:905848/150‑1 GCAGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGT < 2:3356108/150‑1 CAGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTG < 2:246068/150‑1 CAGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTG < 1:3678605/150‑1 AGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGG < 1:1393403/150‑1 AGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGG < 1:1928198/150‑1 AGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGACAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGG < 2:2034607/150‑1 GCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGACGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAG > 1:1832577/1‑150 GCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAG > 2:2090287/1‑150 CGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGC < 1:1434637/150‑1 CGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGC > 2:3591292/1‑150 GAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCACTGTGGGGGCG > 1:1424107/1‑150 AGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGG < 1:1271390/150‑1 GGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGG < 1:4378391/150‑1 TCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAACACCGGCAAAGCCGGTG < 1:3679283/150‑1 GGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAA‑CCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCTTTGCCGGTGttcgc < 2:4338165/150‑6 GGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAA‑CCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCTTTGCCGGTGttcgc < 1:2430153/150‑6 GGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAA‑CCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCTTTGCCGGTGttcgc < 1:2430117/150‑6 GATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTT < 2:1574241/150‑1 TTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTC < 1:1764987/150‑1 GGCGGGGAAGCCAGGTGAGGACGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACACTCCTTAAGGGGTCGCCAAACCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGC < 2:4364823/150‑1 GGCGGGGAAGCCAGGTGAGGAAGGGCAGCATTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAACCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAATCCGGTGCCAAGCAACGCGTTGGCTTTTTCGC < 2:1896386/150‑1 GGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGC < 1:2998857/150‑1 GGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGC < 2:2628547/150‑1 GGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGC < 2:2023012/150‑1 GGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAAGCCTTAAGGGGTCGCCAAACCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGC < 2:4364828/150‑1 CAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAACCCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTT < 1:2543180/150‑1 CCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCT > 2:3876468/1‑150 gGTGGGAGCGGGCGCGCCCGCGAACACCGGCAACGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTC < 2:55024/149‑1 TGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCGACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTC < 2:3894952/150‑1 TGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTC < 2:1505921/150‑1 TGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTC < 1:2528413/150‑1 GTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCC > 1:408131/1‑150 GTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCC < 1:3165106/150‑1 GGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTC > 1:1852915/1‑150 GGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCA > 1:4180935/1‑150 GAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCAC > 2:1699383/1‑150 GAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCAC > 2:3974433/1‑150 AGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCACC > 2:2593982/1‑150 GGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCACCTGG > 2:1321753/1‑150 GGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCACCTGGC < 2:409449/150‑1 GCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCACCTGGCT > 2:1563122/1‑150 GCGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGAGTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCACCTGGCT > 1:1533143/1‑150 CGGCAGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/86604‑86765‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggcGCGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGCTTGGCGACCCCTTAAGGATTGTGGATAACCCATGCATCGCCTCTCTTTACTGCTGCCCTTCCTCACCTGGCT < NC_002947/86824‑86677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |