New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3492817	174 (0.880)	9 (0.050)	4/264	NT	5.1%	coding (539/2637 nt)	clpV	protein ClpV1
	?	NC_002947	= 3492850	170 (0.900)					coding (506/2637 nt)	clpV	protein ClpV1

GGTGAGGATGTCGACCATCTGCCGTACTTCGAACTCACGGCCCAGCACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3492666‑3492817 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCGT  <  NC_002947/3492850‑3492702                                                                                                                                                                                                                                                                                                               GGTGAGGATGTCGACCATCTGCCGTACTTCGAACTCACGGCCCAGCACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTGGCGC                                                                                                                                                         >  2:923375/1‑150  GTGAGGATGTCGACCATCTGCCGTACTTCGAACTCACGGCCCAGCACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTGGCGCC                                                                                                                                                        >  2:2670065/1‑150  GTGAGGATGTCGACCATCTGCCGTACTTCGAACTCACGGCCCAGCACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTGGCGCC                                                                                                                                                        >  2:1292122/1‑150  GTGAGGATGTCGACCATCTGCCGTACTTCGAACTCACGGCCCAGCACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTGGCGCC                                                                                                                                                        >  2:1292094/1‑150                 ATCTGCCGTACTTCGAACTCACGGCCCAGCACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTGGCGCCGAGTCCAGGCAGGCC                                                                                                                                         >  1:1812042/1‑150                                        GCCCAGCACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTGGCGCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGC                                                                                                                  <  1:3093775/150‑1                                            AGCACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTGGCGCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCA                                                                                                              <  1:1800844/150‑1                                            AGCACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTGGCGCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCA                                                                                                              <  2:3612470/150‑1                                              CACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTGGCGCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGT                                                                                                            <  1:2557894/150‑1                                              CACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTGGCGCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGT                                                                                                            <  2:1812042/150‑1                                               ACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTAGCGCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTG                                                                                                           <  2:2447421/150‑1                                                                                                    GTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTAGCGCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAG                                                                                                             >  2:961435/1‑95                                                                                                    GTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTAGCGCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAG                                                                                                             <  1:961435/95‑1                                                                                                                                                   GCGCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGG       <  1:3578872/150‑1                                                                                                                                                   GCGCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGG       <  1:3528408/150‑1                                                                                                                                                   GCGCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGG       >  1:3252292/1‑150                                                                                                                                                     GCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGC     >  1:98067/1‑150                                                                                                                                                     GCCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGC     <  2:1247005/150‑1                                                                                                                                                      CCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCC    >  2:1390248/1‑150                                                                                                                                                      CCGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCC    <  2:2375755/150‑1                                                                                                                                                       CGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCG   >  2:789266/1‑150                                                                                                                                                       CGAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCG   >  1:2210357/1‑150                                                                                                                                                        GAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCGT  <  1:3988909/150‑1                                                                                                                                                        GAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCGT  <  1:2974143/150‑1                                                                                                                                                        GAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCGT  <  1:2703631/150‑1                                                                                                                                                        GAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCGT  <  2:488373/150‑1                                                                                                                                                        GAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCGT  <  2:61161/150‑1                                                                                                                                                        GAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCGT  <  1:2551109/150‑1                                                                                                                                                                                                                                                                                                               GGTGAGGATGTCGACCATCTGCCGTACTTCGAACTCACGGCCCAGCACCGGGTCGATGCGGCCTTCGCGGGCGCTTTGGGTAAGGTTGACCGTGTACTGGTCCAGCGCCGGGGTCTTGCCGCTGGCCTTGCTCGACGTGCTCACTGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3492666‑3492817 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgAGTCCAGGCAGGCCAGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACACGGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCGT  <  NC_002947/3492850‑3492702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.