| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5515237 | 102 (0.520) | 8 (0.050) | 6/224 | NT | 8.3% | intergenic (+45/‑109) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 5515293 | 94 (0.590) | intergenic (+101/‑53) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein | |||||
TGACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5515063‑5515237‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgccggcctcttcgcgggtaaACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCACCTG < NC_002947/5515293‑5515145 TGACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCG > 2:3165882/1‑150TGACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCG > 1:2028738/1‑150TGACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCG > 1:2028789/1‑150 GACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGC > 1:3939365/1‑150 CATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCT < 2:1802006/150‑1 ATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTG > 2:2003528/1‑150 TGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGT < 1:2652872/150‑1 TGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGT < 1:2652454/150‑1 CTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCCGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCG > 2:3648544/1‑150 CTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGATGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCG < 2:3319431/150‑1 CTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCG < 2:876545/150‑1 TTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGG < 2:1981555/150‑1 TCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGC > 1:3239128/1‑150 TCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGC < 2:4383348/150‑1 TCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGC < 1:4244855/150‑1 GTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCT < 1:2666767/150‑1 GGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCgcgt > 1:643666/1‑146 GCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTC > 2:3697680/1‑150 GCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCATC > 2:3697762/1‑150 CAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATTTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCG > 2:1031068/1‑150 AGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGC < 1:2619878/150‑1 CATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGG < 1:1484347/150‑1 CATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGG < 1:4337523/150‑1 TGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTA < 1:2452134/150‑1 CCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTcac > 2:1815055/1‑147 CTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATATGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTA < 2:1114783/150‑1 GCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGG < 1:3485093/150‑1 GCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGG < 2:4254449/150‑1 AGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTT < 1:1334967/150‑1 AGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTT < 1:3289823/150‑1 GTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTAC < 1:3855987/150‑1 GCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCGTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCC < 2:810410/150‑1 AGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCAGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGC < 1:1357067/150‑1 GCCTGGGCGGGCCTCTTCGCGGGTAAACCCGCTCCTCCGACGGGAACCGCCCCATGGCTTTACGCCCACTGTAGGAACGGGTTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGA < 2:3024259/150‑1 CTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACC > 2:1053112/1‑150 TGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAACGCGGGCACCGCCCCATGGCATTACGCCCACGGTAGGGACCGGGTTAACCGCGAAGAGGCCGGCACAGGCGCCAAAAAATAAAATAAGGTCAGCGGCCCAGAAAAACCTCGACCACC > 2:335819/1‑150 CCGGCCTCTTCGCTGGTAAACCCGCCCCCCCGCCGGGAACCGCCCCAGGGCATTCCGCCCACTGTAGCACGGGGGTTACCCGCGAAGCGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCG < 1:936590/150‑1 CGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCCCTGTAGGAACGGGGGTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAAGTCAAAGCCGGTCCGCGGCCCAGATACACCGCGACCCCCCGC > 2:3939365/1‑150 CGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGACGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGC < 2:3665874/150‑1 CGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCAAGGCATTAAGCCCACTGTAGGAACCGGGTTACCCGCGAAGAGGCCGGCCCCGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCACGACCACCCGC > 1:2165175/1‑150 GCCTCTGCGCGGCTAAACCCGCTCCCCCGACGGCACCCGCCCCATGGAATTCCCCCCACTGTCGGACGGGGGTCACCCGCGACGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTC < 1:2907681/150‑1 taggaGCGGGTTTACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATC > 1:2694220/6‑150 ggTTCGCGGGTAAACCCGCCCCACCCTGGGGAACCGCGCCCTGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGCGGCCGGCACAGGCGCCAAAAATTCAACTCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATC < 2:2740129/148‑1 TCTTCGGGGGTAAACCCGCTCCTACGTCGGGAACCGCCCCTTGGCATTACGCCCACTGTCGGAACGGGGTTACCCGCGAAGTGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATC < 2:2739708/150‑1 TCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATC > 1:977862/1‑150 TCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGC > 2:3905694/1‑150 TCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGC > 2:979521/1‑150 GGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACCGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCA > 1:1536139/1‑150 GGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCA > 1:215053/1‑150 GTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCAC > 1:1056922/1‑150 AACCCGCTCCTACGACGGGAACCGCCCCTTGGCATTACGCCCACTGTAGGAACGGGTTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCACCTG < 2:817394/150‑1 AACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCACCTG < 2:1857993/150‑1 TGACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5515063‑5515237‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgccggcctcttcgcgggtaaACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCACCTG < NC_002947/5515293‑5515145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |