| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5521795 = | 173 (0.880) | 13 (0.070) | 10/256 | NT | 6.8% | intergenic (‑96/‑130) | PP_4852/PP_4853 | AraC family transcriptional regulator/DMT superfamily permease |
| ? | NC_002947 | 5521880 = | 195 (1.070) | intergenic (‑181/‑45) | PP_4852/PP_4853 | AraC family transcriptional regulator/DMT superfamily permease | |||||
ATGGCGGTGAGGGGGAACAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5521953‑5521795‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGCTTCTA > NC_002947/5521880‑5522028 ATGGCGGTGAGGGGGAACAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGAGACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGC < 1:2543095/150‑1 TGGCGGTGAGGGGGAACAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCC > 1:2194944/1‑150 GGTGAGGGGGAACAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCG > 1:1354037/1‑150 GGTGAGGGGGAACAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCG > 2:2509041/1‑150 GGTGAGGGGGAACAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCG > 1:3747452/1‑150 TGAGGGGGAACAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAA < 1:4053352/150‑1 TGAGGGGGAACAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAA < 2:2328802/150‑1 TGAGGGGGAACAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAA < 1:3046130/150‑1 TGAGGGGGAACAGGTAGTTCATGCAGCAGGGTACGCGCTGGGGGCTGGAAGGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGAGACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAA < 1:2370397/150‑1 TGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGGGAACCCGCGCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCCGCCCCCAGCGAGTACCCGGCg > 2:3656304/1‑149 CCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCT > 2:685934/1‑150 CCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCT > 1:381501/1‑150 CTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTC > 2:2635760/1‑150 CTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTC > 1:252441/1‑150 GCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCG > 2:245665/1‑150 GCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCG > 2:4352302/1‑150 GGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGGCCTGCAAGGCAGCCCCATTTCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCA > 1:3420386/1‑150 GTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTAC > 1:870225/1‑113 GTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTAC < 2:870225/113‑1 CCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTC > 1:1986068/1‑150 CGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATC > 1:4447333/1‑150 GGG‑GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGC < 2:381501/150‑1 GG‑GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCG < 1:245665/150‑1 CCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATC > 1:4060699/1‑150 CCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATC > 2:765673/1‑150 CCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATC > 1:3990023/1‑150 CCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATC > 1:3022919/1‑150 CCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATC > 1:3022813/1‑150 CCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCAGCCGGTGCCATCCACCCTGCGGAGATC > 2:2601379/1‑150 CGCGAAGGCCTGCAAGGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCG > 2:106413/1‑150 gaatgGGGCTGCTTTGCAGCCCTATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGG > 2:862806/6‑150 gaatgGGGCTGCTTTGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGG > 2:4070689/6‑150 CGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGC < 1:1770008/150‑1 CGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGC < 1:1986039/150‑1 CGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGC < 2:1124762/150‑1 CGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGC < 1:685934/150‑1 CGAAGGGCTGCAAAGCAGCCCCAGTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGC < 2:4168702/150‑1 AAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGCTT < 2:4349957/150‑1 AAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGCTT > 2:625147/1‑150 AGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGCTTC > 2:547087/1‑150 AGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGCTTC < 1:4008557/150‑1 GGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGCTTCTA > 1:900681/1‑150 ATGGCGGTGAGGGGGAACAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGG‑GAGCCCGCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5521953‑5521795‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGCTTCTA > NC_002947/5521880‑5522028 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |