New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2693837 | 15 (0.900) | 4 (0.240) | 3/286 | 1.9 | 25.8% | coding (33/534 nt) | PP_2359 | putative Type 1 pili subunit CsuA/B protein |
? | NC_002947 | = 2693873 | 8 (0.480) | coding (69/534 nt) | PP_2359 | putative Type 1 pili subunit CsuA/B protein |
GGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2693720‑2693837 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCTGGGCCTGG‑GAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGT < NC_002947/2693873‑2693760 GGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGG‑GAAGCCAACGCCAGGCCCA < 1:74504/150‑1 GGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGG‑GAAGCCAACGCCAGGCCCA < 1:74517/150‑1 GCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCACGCCTGGGCCTGG‑GAAGCCAACGCCAGGCCCAGGCCTGCGAGGAC > 2:187742/1‑150 CCGATGCGAACGAACCTTTCATAGTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTC‑CCAGGCCCAGGCGTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGT > 1:187742/1‑150 GGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2693720‑2693837 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCTGGGCCTGG‑GAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGT < NC_002947/2693873‑2693760 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |