New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2693837	15 (0.900)	4 (0.240)	3/286	1.9	25.8%	coding (33/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	NC_002947	= 2693873	8 (0.480)					coding (69/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein

ACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTC‑CCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGC  >  NC_002947/2693760‑2694007                                                                                                                   |                                                                                                                                       acCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCACGCCTGGGCCTGG‑GAAGCCAACGCCAGGCCCAGGCCtgcgaggacgcactatgaaaggttcgttcgcatcgg                                                                                                    >  1:187742‑M2/1‑114 (MQ=255)     tCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTC‑CCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGa                                                                                                >  1:71681/1‑150 (MQ=255)     tCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTC‑CCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGa                                                                                                >  1:71685/1‑150 (MQ=255)                cTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTC‑CCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGc                                                                                     <  1:26110/150‑1 (MQ=255)                      tGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTC‑CCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTc                                                                               >  1:332818/1‑150 (MQ=255)                                  aaGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTC‑CCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATggcacgtcg                                                                   >  1:116650/1‑150 (MQ=255)                                                                      gTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTC‑CCAGGCCCAGGCGtgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgtggttaccagtccagggtcactctgagggtgtcgcggtaaagcccggccggcagcgc                               >  2:187742‑M2/1‑45 (MQ=255)                                                                          tCGCAGGCCTGGGCCTGGCGTTGGCTTC‑CCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCa                           >  2:350697/1‑150 (MQ=255)                                                                                   tgggcctggCGTTGGCTTC‑CCAGGCCCAGGCCtgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgtggttaccagtccagggtcactctgagggtgtcgcggtaaagcccggccggcagcgcacgcggttgcgcc                  <  1:74504‑M2/150‑119 (MQ=255)                                                                                   tgggcctggCGTTGGCTTC‑CCAGGCCCAGGCCtgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgtggttaccagtccagggtcactctgagggtgtcgcggtaaagcccggccggcagcgcacgcggttgcgcc                  <  1:74517‑M2/150‑119 (MQ=255)                                                                                                   ttC‑CCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCAccgc  >  1:75840/1‑150 (MQ=255)                                                                                                   ttC‑CCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCAccgc  >  2:383917/1‑150 (MQ=255)                                                                                                                   |                                                                                                                                       ACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTC‑CCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGC  >  NC_002947/2693760‑2694007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.