New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 164102 = | 12 (0.720) | 3 (0.180) | 3/280 | 1.9 | 22.4% | coding (1355/1437 nt) | pntB | pyridine nucleotide transhydrogenase subunit beta |
? | NC_002947 | 164137 = | 9 (0.550) | coding (1320/1437 nt) | pntB | pyridine nucleotide transhydrogenase subunit beta |
AAAAGAAAAGCCCCGGCAGATTCTGACCGGGGCTTCCTTTATATCAGCTGGTTTGCAGCGGCTGGTGTCACTCCACCGCCTTGACCATGTCCTCGATGACCTTCTTGGCGTCACCGAACACCATCATGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGAGCGCTTGTTGACGATGATGGTCTTGGCCTTGAACGCTTCGAGGATCGGCATGCCGGCGATTGGCGACTTGGGGTCGTTCTTCGCCGCCGGGTTGACCACGTCGTTGGCGC > NC_002947/163953‑164246 | acgccgagttcggacaggccgacgtggtgctggtactgggcgccaacgacgtggtcaacccggcggcgaagaacgaccccaagtcgccaatcgccggcatgccgatcctcgaagcgttcaaggccaagaccatcatcgtcaacaagcgct < 1:221796‑M1/1‑1 (MQ=255) ccGGGGCTTCCTTTATATCAGCTGGTTTGCAGCGGCTGGTGTCACTCCACCGCCTTGACCATGTCCTCGATGACCTTCTTGGCGTCACCGAACACCATCATGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTg < 2:1541/150‑1 (MQ=255) ggggCTTCCTTTATATCAGCTGGTTTGCAGCGGCTGGTGTCACTCCACCGCCTTGACCATGTCCTCGATGACCTTCTTGGCGTCACCGAACACCATCATGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGc < 1:102553/150‑1 (MQ=255) gggCTTCCTTTATATCAGCTGGTTTGCAGCGGCTGGTGTCACTCCACCGCCTTGACCATGTCCTCGATGACCTTCTTGGCGTCACCGAACACCATCATGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGcc < 1:371751/150‑1 (MQ=255) tatCAGCTGGTTTGCAGCGGCTGGTGTCACTCCACCGCCTTGACCATGTCCTCGATGACCTTCTTGGCGTCACCGAACACCATCATGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGAGCGCttg > 2:221796/1‑150 (MQ=255) caacgacgtggtcaacccggcggcgaagaacgaccccaagtcgccaatcgccggcatgccgatcctcgaagcgttcaaggccaagaccatcatcgtcaacaagcgcTCGATG‑‑‑‑‑GCCGGCATAGCCGCTGGCCATCGAGCGCTTGTTGACga > 1:248545‑M1/107‑150 (MQ=255) cAGCGGCTGGTGTCACTCCACCGCCTTGACCATGTCCTCGATGACCTTCTTGGCGTCACCGAACACCATCATGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGAGCGCTTGTTGACGATGATGGt > 1:106053/1‑150 (MQ=255) gtCACTCCACCGCCTTGACCATGTCCTCGATGACCTTCTTGGCGTCACCGAACACCATCATGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGAGCGCTTGTTGACGATGATGGTCTTGGCCTTGa < 2:106053/150‑1 (MQ=255) aacgaccccaagtcgccaatcgccggcatgccgatcctcgaagcgttcaaggccaagaccatcatcgtcaacaagcgcTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGa < 1:334196‑M1/35‑1 (MQ=255) aacgaccccaagtcgccaatcgccggcatgccgatcctcgaagcgttcaaggccaagaccatcatcgtcaacaagcgcTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGa > 2:334196‑M1/79‑113 (MQ=255) cTCGATGACCTTCTTGGCGTCACCGAACACCATCATGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGAGCGCttgt < 1:296030/101‑1 (MQ=255) cTCGATGACCTTCTTGGCGTCACCGAACACCATCATGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGAGCGCttgt > 2:296030/1‑101 (MQ=255) tGACCTTCTTGGCGTCACCGAACACCATCAGGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGAGCGCTTGTTGACGATGATGGTCTTGGCCTTGAACGCTTCGAGGATCGGCATGCCGGCGATTg < 2:223765/150‑1 (MQ=255) gTCACCGAACACCATCATGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGAGCGCTTGTTGACGATGATGGTCTTGGCCTTGAACGCTTCGAGGATCGGCATGCCGGCGATTGGCGACTTGGGGTc > 1:198854/1‑150 (MQ=255) cGAACACCATCATGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGAGCGCTTGTTGACGATGATGGTCTTGGCCTTGAACGCTTCGAGGATCGGCATGCCGGCGATTGGCGACTTGGGGTCGttct > 2:281861/1‑150 (MQ=255) aCAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGAGCGCTTGTTGACGATGATGGTCTTGGCCTTGAACGCTTCGAGGATCGGCATGCCGGCGATTGGCGACTTGGGGTCGTTCTTCGCCGCCGGGTTGACCACGTCGTTGgcgc < 2:283386/150‑1 (MQ=255) | AAAAGAAAAGCCCCGGCAGATTCTGACCGGGGCTTCCTTTATATCAGCTGGTTTGCAGCGGCTGGTGTCACTCCACCGCCTTGACCATGTCCTCGATGACCTTCTTGGCGTCACCGAACACCATCATGGTCTTGTCCAGATAGAACAGTTCGTTGTCCAGGCCGGCATAGCCGCTGGCCATCGAGCGCTTGTTGACGATGATGGTCTTGGCCTTGAACGCTTCGAGGATCGGCATGCCGGCGATTGGCGACTTGGGGTCGTTCTTCGCCGCCGGGTTGACCACGTCGTTGGCGC > NC_002947/163953‑164246 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |