New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 401360 = | 12 (0.720) | 11 (0.730) | 3/260 | 1.7 | 55.1% | coding (943/1059 nt) | PP_0334 | transposase |
? | NC_002947 | 3970871 = | 7 (0.460) | coding (1033/1179 nt) | PP_3498 | transposase |
ATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGG > NC_002947/401212‑401497 | gtcagaggctcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttcgattagccagcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaag‑a > 2:311169‑M1/149‑150 (MQ=255) tcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttcgattagccagcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGAt < 2:181254‑M1/11‑1 (MQ=255) gCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCt > 1:26326/1‑150 (MQ=31) gAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGCTACAGAGCGATCAGGTTTACCa > 1:277879/1‑150 (MQ=17) ccAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACg > 1:26034/1‑150 (MQ=32) aatccgcagatttcgattagccagcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGATCAT‑CTGGCTGATCGGAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAAc < 2:158329‑M1/81‑1 (MQ=255) gCCTGATTCCGATCAGCCTGATGATCGCCGCCTCTTGCGCTTGCTATCCCGAGTTGGGCGCATGG‑AGGCGGCGATAAGGCTGTCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTTCCAACGCAAACcgaa < 1:350081/150‑1 (MQ=11) tCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGaaaaa > 2:247173/1‑150 (MQ=32) aTCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCgg > 1:115244/1‑150 (MQ=32) ccAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcg > 2:109865/1‑150 (MQ=32) agcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaaGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAACAACCGGAggcg < 2:63958‑M1/103‑1 (MQ=255) atCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGa < 2:282284/150‑1 (MQ=32) gcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCctct < 1:270368‑M1/115‑1 (MQ=255) gcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCa < 1:371928‑M1/65‑1 (MQ=255) gcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCa > 2:179361‑M1/36‑100 (MQ=255) gcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCa > 2:179364‑M1/36‑100 (MQ=255) gcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCa > 2:179365‑M1/36‑100 (MQ=255) gcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCa < 1:179365‑M1/65‑1 (MQ=255) gcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCa < 1:179364‑M1/65‑1 (MQ=255) gcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCa < 1:179361‑M1/65‑1 (MQ=255) gcctccttgcgcccaaggcgggatagccagcgcaaG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCa > 2:371928‑M1/36‑100 (MQ=255) tATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt < 1:109865/150‑1 (MQ=32) ccGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCa > 1:83533/1‑150 (MQ=32) ccGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCa > 2:244287/1‑150 (MQ=32) cTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGATACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCgg < 2:277879/150‑1 (MQ=17) | ATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGG‑AGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGG > NC_002947/401212‑401497 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |