New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1526707 | 11 (0.660) | 4 (0.260) | 3/268 | 1.8 | 24.8% | coding (852/957 nt) | ddlB | D‑alanine‑‑D‑alanine ligase B |
? | NC_002947 | = 1526720 | 14 (0.900) | coding (865/957 nt) | ddlB | D‑alanine‑‑D‑alanine ligase B |
GAACAGGAACTGATCGACCTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAGGTTAATAACCATGCAAGGCGCGATGATACGTCAGCAGCAACCCGTTACC > NC_002947/1526579‑1526856 | gaacaggaacTGATCGACCTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGACAGATCATAgcctggtg < 2:320700‑M2/150‑9 (MQ=255) aacTGATCGACCTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGCTATGATCTGTCATcctggtgcggtgtt > 1:310298‑M2/1‑136 (MQ=255) aacTGATCGACCTGACCGCGCGCGCCTGCGATGCCAGTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGCTATGATCTGTCATcctggtgcggtgtt > 1:310304‑M2/1‑136 (MQ=255) aCCTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTg > 2:43040/1‑150 (MQ=255) tGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCgg > 2:187105/1‑150 (MQ=255) cttcGATGCCAATGGCATCGCAGGCTGTGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTg > 2:265057/4‑145 (MQ=255) cttcGATGCCAATGGCATCGCAGGCTGTGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTg < 1:265057/142‑1 (MQ=255) aTTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTg < 1:43040/150‑1 (MQ=255) aTCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCGGGC‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTg < 1:277504/150‑1 (MQ=255) gCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGCtatgatctgtcatgcctggtgcgg < 1:349279‑M1/76‑25 (MQ=255) gCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGCtatgatctgtcatgcctggtgcgg > 2:349279‑M1/1‑52 (MQ=255) ggCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAGGt > 2:307666/1‑141 (MQ=255) ggCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAGGt < 1:307666/141‑1 (MQ=255) tgctCGAAGTCAACACCGCACCAGGC‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCAAGGTTAATAACCATGCAAGGCGCgat < 1:323439/150‑1 (MQ=255) aGTCAACACCGCACCAGGC‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAGGTTAATAACCATGCAAGGCGCGATGATACGt < 1:73919/150‑1 (MQ=255) aaCACCGCACCAGGCatgacagatcatagcctggtgcggtgttgacttcgagcagccagaaccggccctgctcgtcctgcatcacgtccaaccgcccccagccttcgatgccactggcatcgcaggcgcgcgcggtcaggtcgatcagtt > 1:310304‑M1/1‑15 (MQ=255) aaCACCGCACCAGGCatgacagatcatagcctggtgcggtgttgacttcgagcagccagaaccggccctgctcgtcctgcatcacgtccaaccgcccccagccttcgatgccaatggcatcgcaggcgcgcgcggtcaggtcgatcagtt > 1:310298‑M1/1‑15 (MQ=255) ccGCACCAGGC‑ATGACAGATCATAgcctggtgcggtgttgacttcgagcagccagaaccggccctgctcgtcctgc < 1:349279‑M2/76‑53 (MQ=255) ccGCACCAGGC‑ATGACAGATCATAgcctggtgcggtgttgacttcgagcagccagaaccggccctgctcgtcctgc > 2:349279‑M2/1‑24 (MQ=255) cACCAGGCtatgatctgtcatgcctggtgcggtgttgacttcgagcagccagaaccggccctgctcgtcctgcatcacgtccaaccgcccccagccttcgatgccaatggcatcgcaggcgcgcgcggtcaggtcgatcagttcctgttc < 2:320700‑M1/150‑143 (MQ=255) c‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAGGTTAATAACCATGCAAGGCGCGATGATACGTCAGCAGCAACCCGTTAcc < 1:48874/150‑1 (MQ=255) | GAACAGGAACTGATCGACCTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGACAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAGGTTAATAACCATGCAAGGCGCGATGATACGTCAGCAGCAACCCGTTACC > NC_002947/1526579‑1526856 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |