New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2335236 | 14 (0.840) | 4 (0.240) | 4/280 | 1.6 | 22.4% | coding (203/1185 nt) | fadA | 3‑ketoacyl‑CoA thiolase |
? | NC_002947 | = 2335264 | 14 (0.860) | coding (231/1185 nt) | fadA | 3‑ketoacyl‑CoA thiolase |
TGAAAACCCCCAGCATGACGGCTGTCGCTATCCGCGCCGCAGTAGAACGTGCTGGCATCGAACCGGCGCAGGTCGATGACCTGGTGCTGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATGGCATGCAGGTGACCATTGGCGCAGGTCA > NC_002947/2335107‑2335383 | tGAAAACCCCCAGCATGACGGCTGTCGCTATCCGCGCCGCAGTAGAACGTGCTGGCATCGAACCGGCGCAGGTCGATGACCTGGTGCTGGGGACTGCCATGCAGAGCGGCACTGCCGCGAGCAACCCGGGTCGGCTGTCGGCGCTGgccg > 2:348539/1‑150 (MQ=255) ccccAGCATGACGGCTGTCGCTATCCGCGCCGCAGTAGAACGTGCTGGCATCGAACCGGCGCAGGTCGATGACCTGGTGCTGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGtcggccggcggccagcgccgacagccg > 1:375742‑M1/1‑123 (MQ=255) aGCATGACGGCTGTCGCTATCCGCGCCGCAGTAGAACGTGCTGGCATCGAACCGGCGCAGGTCGATGACCTGGTGCTGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGtcggccggcggccagcgccgacagccgaccc < 2:375742‑M1/150‑32 (MQ=255) tGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGa < 1:174480/150‑1 (MQ=255) tGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGa > 2:55608/1‑150 (MQ=255) accggACAGACATGCATAGAGTCACTGACGCGATCAACCATGTTAGGATGTCGGCGCAGGACTCCGGCCAGCCAAAATCGGTCAGCGTTCAGAACGACGACCGACAGAGTGCTACAGGCATGATGGCCATTGCCACGGCGGCGAAGCAGa > 2:249139/4‑150 (MQ=255) gACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCAt > 2:9849/1‑150 (MQ=255) tGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGcaggccggcggccagcgccgacagccgacccg < 2:159406‑M1/68‑33 (MQ=255) tGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGcaggccggcggccagcgccgacagccgacccg > 1:159406‑M1/1‑36 (MQ=255) tGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGt > 1:81194/1‑150 (MQ=255) tGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGt > 1:81192/1‑150 (MQ=255) gCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGtt > 2:251983/1‑150 (MQ=255) ccATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGc > 2:197/1‑95 (MQ=255) ccATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGc < 1:197/95‑1 (MQ=255) cATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGa < 2:11978/150‑1 (MQ=255) aTGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGAt < 2:173361/150‑1 (MQ=255) tGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATg > 1:319685/1‑150 (MQ=255) gCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATGGCATGc < 1:51121/150‑1 (MQ=255) cGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGcccgggttgatcgcggcagtgccgctctgcatggca < 2:159406‑M2/68‑37 (MQ=255) cGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGcccgggttgatcgcggcagtgccgctctgcatggca > 1:159406‑M2/1‑32 (MQ=255) gggTCGGCTGTCGGCGCTGGCCGCCGGCCGAcccgggttgatcgcggcagtgccgctctgcatggcagtccccagcaccaggtcatcgacctgcgccggttcgatgccagcacgttctactgcggcgcggatagcgacagccgtcatgct < 2:375742‑M2/150‑120 (MQ=255) | TGAAAACCCCCAGCATGACGGCTGTCGCTATCCGCGCCGCAGTAGAACGTGCTGGCATCGAACCGGCGCAGGTCGATGACCTGGTGCTGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATGGCATGCAGGTGACCATTGGCGCAGGTCA > NC_002947/2335107‑2335383 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |