New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2458799 = | 16 (0.960) | 4 (0.290) | 4/234 | 1.3 | 29.5% | intergenic (+85/‑96) | gapB/PP_2150 | glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein |
? | NC_002947 | 2458863 = | 6 (0.440) | intergenic (+149/‑32) | gapB/PP_2150 | glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein |
TTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCA > NC_002947/2458662‑2458940 | ttCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAAc < 2:198616/150‑1 (MQ=255) gtagctgctgcccatggtcggaccacccaggcgctccagggtggggccttggttgcaggcggtgagtagcagcagaatgaacagtagggctgtgcgcacagtagggtttctcggttgccggtgctggcctcTTCGCGGGTAAAACAGCTc < 1:232949‑M1/19‑1 (MQ=255) tGGAAGACATGGCTGGTGTGAACCCGCCAGCGGTTCCACGCTGATTCGCTTGTAAGGCACTGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTa < 2:267601/150‑1 (MQ=255) tgctgcccatggtcggaccacccaggcgctccagggtggggccttggttgcaggcggtgagtagcagcagaatgaacagtagggctttgcgcacagtagggtttctcggttgcctgtgctggcctcTTCGCGGGTAAACCCGCTCCTact > 1:154671‑M1/127‑149 (MQ=255) tgctgcccatggtcggaccacccaggcgctccagggtggggccttggttgcaggcggtgagtagcagcagaatgaacagtagggctgtgcgcacagtagggtttctcggttgccggtgctggcctcTTCGCGGGTAAACCCGCTCCTACa > 1:60782‑M1/127‑150 (MQ=255) ctgcccatggtcggaccacccaggcgctccagggtggggccttggttgcaggcggtgagtagcagcagaatgaacagtagggctgtgcgcacagtagggtttctcggttgccggtgctggcctcTTCGCGGGTAAACCCGCTCCTACAgg > 2:133135‑M1/125‑150 (MQ=255) aCATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAAGCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTAGAGGAt > 2:232949/1‑150 (MQ=255) gtgtGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGc > 2:147193/1‑150 (MQ=255) aggcgctccagggtggggccttggttgcaggcggtgagtagcagcagaatgaacagtagggctgtgcgcacagtagggtttctcggttgtcagtgccggccctTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGa > 2:78539‑M1/104‑150 (MQ=255) ggcgctccagggtggggccttgggtgcaggcggtgagtagcagcagaatgaacagtagggctgtgcgcacagtagggtttctaggttgtcagtgccggccctTTCGCGGGTAACCCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAg > 2:270196‑M1/103‑150 (MQ=255) gCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCgg < 1:383200/150‑1 (MQ=37) gCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCgg < 1:285831/150‑1 (MQ=255) gCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCgg < 2:313833/150‑1 (MQ=25) cGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCggg < 1:341999/150‑1 (MQ=255) gtGTAAGGCAATGAAAAAAGGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa < 2:229690/149‑1 (MQ=255) tGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCGCCTCCAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAAc < 2:310019/150‑1 (MQ=255) aaaaaCGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGAGTTTACCCGCGAAGAGGCCAGCACCGGCAACCga < 1:147193/150‑1 (MQ=255) aaaCGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAg > 1:285301/1‑108 (MQ=255) aaaCGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAg < 2:285301/108‑1 (MQ=255) agtagggctgtgcgcacagtagggtttctcggttgccggtgctggcctcTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGc > 1:82859‑M1/50‑98 (MQ=255) agtagggctgtgcgcacagtagggtttctcggttgccggtgctggcctcTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGc < 2:82859‑M1/49‑1 (MQ=255) ttttttttttATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAAACCGCAACTAAAGGTTGATCGCTGCCCCGGTAGGATCGGGTTTAACCCCGAAGAGGGCAGCACCGGCACCCGACGAACCCAACGGTGCGCACAGccc > 1:350150/2‑150 (MQ=255) gttgtCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTc < 2:314221/150‑1 (MQ=255) ccGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCa > 2:248980/1‑150 (MQ=255) | TTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCA > NC_002947/2458662‑2458940 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |