New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3953036 = | 10 (0.600) | 3 (0.220) | 3/230 | 1.5 | 31.5% | intergenic (‑34/+161) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
? | NC_002947 | 3953152 = | 5 (0.370) | intergenic (‑150/+45) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
GACCCGGGCTTGCAATTGAGCGTCGCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCC > NC_002947/3952889‑3953179 | gatgttgcaggtaaacgctggagcaagattcgcccggatgcaccgccagcggcgattgcccagcgcatgcagctgttgacccagccgctggccggtcggtgagtatcatgggccgcctggggaattggcctctgtggcatccgcttttgt > 1:331691‑M1/148‑150 (MQ=255) gatgttgcaggtaaacgctggagcaagattcgcccggatgcaccgccagcggcgattgcccagcgcatgcagctgttgacccagccgctggccggtcggtgagtatcatgggccgcctggggaattggcctctgtggcatccgcttttgt > 1:331719‑M1/148‑150 (MQ=255) gACCCGGGCTTGCAATTGAGCGTCGCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCtgt > 2:269965/1‑150 (MQ=255) gcaggtaaacgctggagcaagattcgcccggatgcaccgccagcggcgattgcccagcgcatgcagctgttgacccagccgctggccggtcggtgagtatcatgggccgcctggggacttggcctctgtggcatccgctttTGTGGGAGc < 1:216972‑M1/9‑1 (MQ=255) aTTGAGCGTCGCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGccgggg > 1:90275/1‑146 (MQ=255) gCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAg < 1:5260/150‑1 (MQ=255) gcctggaCGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCt < 1:175986/145‑1 (MQ=255) cgGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCgg < 2:276409/150‑1 (MQ=255) gTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAagag < 2:203598/150‑1 (MQ=255) gTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCGTTCGGCGCGAAAGGGCAGCGCAGCAGCCCCCCCAGTGGCAGCTCAAGCGCAGGAAGAGGGGGGCCCTggg > 2:155300/1‑148 (MQ=255) cgggggggtgtttatcttgggccgcctgggtatttggcctctggggcatccgctttTGGGGGCGCGGCCTTGCGTCGCCAACGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTc > 1:322922‑M1/57‑150 (MQ=255) gggcTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCtctct < 1:269965/150‑2 (MQ=255) cggtcggtgagtatcatgggccgcctggggaattggcctctgtggcatccgctttTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTcg > 2:216972‑M1/56‑150 (MQ=255) tcggtgagtatcatgggccgcctggggaattggcctctgtggcatccgctttTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGa > 1:283723‑M1/53‑150 (MQ=255) tgcGCACGCCGGGTGGGTGGGGCCTTGCGGCGCCATGGGGGGGCGCCGCCCCCCCGCCTGTGGCAGCTCACGCGAATAATGTGGGTCGGGGGGCGGCCGCCTTCCGCGACGAATGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCaa < 2:277829/148‑1 (MQ=255) ccgCCCTGTGGGCGCGGCCTTGCCTCGCGAACGGGCTGCGCCGCAGCCCCGGCCGTGGCAGCACACGCGCAGAAAGCGGGGAGCGCTGCGCGCCCCTTTCGCGACGCATGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTccc < 2:377027/148‑1 (MQ=255) | GACCCGGGCTTGCAATTGAGCGTCGCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCC > NC_002947/3952889‑3953179 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |