New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3953036 = | 10 (0.600) | 3 (0.220) | 3/230 | 1.5 | 31.5% | intergenic (‑34/+161) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
? | NC_002947 | 3953152 = | 5 (0.370) | intergenic (‑150/+45) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
ATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACC > NC_002947/3953025‑3953301 | tgcGCACGCCGGGTGGGTGGGGCCTTGCGGCGCCATGGGGGGGCGCCGCCCCCCCGCCTGTGGCAGCTCACGCGAATAATGTGGGTCGGGGGGCGGCCGCCTTCCGCGACGAATGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCaa < 2:277829/148‑1 (MQ=255) ccgCCCTGTGGGCGCGGCCTTGCCTCGCGAACGGGCTGCGCCGCAGCCCCGGCCGTGGCAGCACACGCGCAGAAAGCGGGGAGCGCTGCGCGCCCCTTTCGCGACGCATGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTccc < 2:377027/148‑1 (MQ=255) tcgcgaaaggagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacaAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCaccga > 1:283723‑M2/99‑150 (MQ=255) cgaaaggagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacaAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCaccgaccg > 2:216972‑M2/96‑150 (MQ=255) gaaaggagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagcccgttggcgacgcaaggccgcgcccccaAAAGCGGATGCCCCAGAGGCCAAATACCCAGGCGGCCCAAGataaacacccccccg > 1:322922‑M2/95‑144 (MQ=255) gGGGCTGCTGCGCAGCCCTGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCa < 2:18459‑M1/149‑1 (MQ=255) GGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGCCcggcccgc < 1:211559‑M1/150‑4 (MQ=255) gCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCg > 1:53942/1‑150 (MQ=255) aaGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCaa > 2:11580/1‑150 (MQ=255) cgaaaggAGCGCGCAGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTgg > 1:66154/6‑150 (MQ=255) gctcccacaAAAGCGGATGCCACAGAGGCCAAGTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGc < 1:216972‑M2/141‑1 (MQ=255) acaAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATc > 1:331691‑M2/4‑150 (MQ=255) acaAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATc > 1:331719‑M2/4‑150 (MQ=255) aaaGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCAcc < 1:143415/150‑1 (MQ=255) aaaGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCAcc > 2:12920/1‑150 (MQ=255) | ATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACATCACC > NC_002947/3953025‑3953301 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |