New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4477967 | 13 (0.780) | 4 (0.250) | 4/272 | 1.5 | 24.4% | coding (251/321 nt) | PP_3966 | transposase |
? | NC_002947 | = 4477991 | NA (NA) | coding (227/321 nt) | PP_3966 | transposase |
ACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATG > NC_002947/4477821‑4478116 | aCCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACtt > 1:177153/1‑150 (MQ=32) tAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGcc > 1:138129/1‑150 (MQ=11) gCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCActtgcccgtggccgggcaagtgatca < 1:133940‑M1/150‑27 (MQ=255) gcgcgcATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCActtgcccgtggccgggcaagtgatcacggt < 2:117259‑M1/150‑31 (MQ=255) gcgcATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCAtcgagttgcccgtggccgggcaagtgatcacg < 2:239652‑M1/150‑33 (MQ=255) cgcATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCAtcgagttgcccgtggccgggcaagtgatcacgg < 2:365929‑M1/150‑34 (MQ=255) ttGCGCACAACCCTCGGGATCCGAGGCTATCCATTTCACCGTGATCACTTGCCCGGCCAAGGTCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGATGGTAGTGAAGCTGCTGCGGGCAg > 2:105708/1‑150 (MQ=11) caACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGa < 1:20841/150‑1 (MQ=32) gggATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCgg > 1:69505/1‑150 (MQ=32) ccGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGa < 1:60822/137‑1 (MQ=32) ccGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGa > 2:60822/1‑137 (MQ=32) cTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGc < 2:267357/150‑1 (MQ=32) ttCACCGTGATCACGTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACg < 1:11653/150‑1 (MQ=17) cACCGTGATCACTTGCCCGGCGACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGtt < 2:355965/150‑1 (MQ=17) cACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGtt < 2:355979/150‑1 (MQ=32) tcatcgagttgcccgtggccgggcaagtgatcacggtgaaatggccagcctcggatcccgagggttgtgcgcaatttattcgggctttcgctcaatgatccgcatcgatgccatctggctggccaccgagccgatggacatgcgcgctgg > 1:184612‑M1/1‑3 (MQ=255) tCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGa < 2:177153/150‑1 (MQ=32) catcgagttgcccgtggccgggcaagtgatcacggtgaaatggccagcctcggatcccgagggttgtgcgcaatttattcgggctttcgctcaatgatccgcatcgatgccatctggctggccaccgagccgatggacatgcgcgctggc < 2:290131‑M1/150‑149 (MQ=255) cACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGAt < 2:223052/150‑1 (MQ=32) atcgagttgcccgtggccgggcaagtgatcacggtgaaatggccagcctcggatcccgagggttgtgcgcaatttattcgggctttcgctcaatgatccgcatcgatgccatctggctggccaccgagccgatggacatgcgcgctggca > 1:321212‑M1/1‑1 (MQ=255) | ACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATG > NC_002947/4477821‑4478116 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |