New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5212189 = | 13 (0.780) | 5 (0.340) | 3/254 | 1.7 | 30.7% | intergenic (‑85/+93) | rnd/PP_4592 | ribonuclease D/metal dependent hydrolase |
? | NC_002947 | 5212280 = | 11 (0.740) | intergenic (‑176/+2) | rnd/PP_4592 | ribonuclease D/metal dependent hydrolase |
CAGTCGCGGCAGTGTTCGGCCAGGCTCTGGTCGTCACGGATCCAGTGAATTTCGATGGCCACAAGGCTCTCCCACTAACATTGGCGCGCAGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCACCCTGTGGGAGCGGGCGCGCCCGCGAATGAAGGCAACACGGTGTATGG‑CCCGGGTTTGCCCGGGTTCGCGGGCGTGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAG > NC_002947/5212043‑5212299 | ctggcacggctcagcgatgccccactgtcccaggacaacctgttccactcgatgcttggcctgttgcaggtacataccgagctctaccagcagtcgctggacatgtttgccggttgccggccttggctggcggccaagcgctgaagCCCt < 2:177022‑M1/4‑1 (MQ=255) gcacggctcagcgatgccccgctgtcccaggacaacctgttccactcgatgcttggcctgttgcaggtacataccgagctctaccagcagtcgctggacatgtttgccggttgccggccttggctggcggccaagcgctgaagCCCtgtg > 2:277683‑M1/144‑150 (MQ=255) gcacggctcagcgatgccccgctgtcccaggacaacctgttccactcgatgcttggcctgttgcaggtacataccgagctctaccagcagtcgctggacatgtttgccggttgccggccttggctggcggccaagcgctgaagCCCtgtg > 2:277664‑M1/144‑150 (MQ=255) aGTGTTCGGCCAGGCTCTGGTCGTCACGGATCCAGTGAATTTCGATGGCCACAAGGCTCTCCCACTAACATTGGCGCGCAGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCACCCTGTGGGAGCgg < 2:203270/150‑1 (MQ=255) cAGGCTCTGGTCGTCACGGATCCAGTGAATTTCGCTGGCCACAAGGCTCTCCCACTAACATTGGCGCGCAGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCACCCTGTGGGAGCGGGCGCGCCcgc < 2:377923/150‑1 (MQ=255) ccgctgtcccaggacaacctgttccactcgatgcttggcctgttgcaggtacataccgagctctaccagcagtcgctggacatgtttgccggttgccggccttggctggcggccaagcgctgaagCCCTGTGGGAGCGGGGCCGCCcgcg < 1:127675‑M1/25‑1 (MQ=255) ccgctgtcccaggacaacctgttccactcgatgcttggcctgttgcaggtacataccgagctctaccagcagtcgctggacatgtttgccggttgccggccttggctggcggccaagcgctgaagCCCTGTGGGAGCGGGCCCGCCcgcg < 1:127678‑M1/25‑1 (MQ=255) tcccaggacaacctgttccactcgatgcttggcctgttgcaggtacataccgagctctaccagcagtcgctggacatgtttgccggttgccggccttggctggcggccaagcgctgaagCCCTGTGGGAGCGGGCGCGCCCGCGAATGaa > 2:46837‑M1/120‑150 (MQ=255) gtcACGGATCCAGTGAATTTCGATGGCCACAAGGCTCTCCCACTAACATTGGCGCGCAGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCACCCTGTGGGAGCGGGCGCGCCCGCGAATGAAGGCaa < 2:137377/150‑1 (MQ=255) aCGGATCCAGTGAATTTCGATGGCCACAAGGCTCTCCCACTAACATTGGCGCGCAGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCACCCTGTGGGAGCGGGCGCGCCCGCGCATGAAGGCAaaac > 1:213224/1‑150 (MQ=255) gCTCTCCCACTAACATTGGCGCGCAGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCACCCTGTGGGAGGGGGCGCGCCCGCGCAAGAAGGCAACACGGTGTATGG‑CCCCGGGTTGGCCCGGTTcgc > 1:11440/1‑150 (MQ=255) ggtacataccgagctctaccagcagtcgctggacatgtttgccggttgccggccttggctggcggccaagcgctgaagCCCTGTGGGAGCGGGCGCGCCCGCGAATGAAGGCAACACGGTGTATGG‑CCCGGGTTTGCCCGGGTTCGCggg > 2:361989‑M1/79‑150 (MQ=255) ataccgagctctaccagcagtcgctggacatgtttgccggttgccggccttggctggcggccaagcgctgaagCCCTGTGGGAGCGGGCGCGCCCGCGAATGAAGGCAACACGGTGTATGG‑CCCGGGTTTGCCCGGGTTCGCGGGCGTGc > 1:177022‑M1/74‑150 (MQ=255) cTAACATTGGCGCGCAGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCACCCTGTGGGAGCGGGCGCGCCCGCGAATGAAGGCAACACGGTGTATGG‑CCCGGGTTTGCCCGGGTTCGCGGGCGTGcc < 1:221758/150‑1 (MQ=255) tAACATTGGCGCGCAGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCACCCTGTGGGAGCGGGCGCGCCCGCGAATGAAGGCAACACg < 1:380996/111‑1 (MQ=255) tAACATTGGCGCGCAGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCACCCTGTGGGAGCGGGCGCGCCCGCGAATGAAGGCAACACg > 2:380996/1‑111 (MQ=255) aTTGGCGCGCAGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCAcc < 1:343431/69‑1 (MQ=255) aTTGGCGCGCAGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCAcc > 2:343431/1‑69 (MQ=255) aGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGTGCAGTCCACCCAGTGGGAGCGGGCGCGCCCCCGAAATAACGCAACACCCTGTATGGACCCGGTGTGGCCCGGGTAC‑CCGGCGTGACCGCACCCCCAgccct > 1:149889/1‑146 (MQ=255) aCTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCACCCTGTGGGAGCGGGCGCGCCCGCGAATGAAGGCCACACGGTGGATGG‑CCCGGGTTTGCCCGGGTTCGCGGGCGTGCCCGCTCCCACAGGGCTTCAGCGCTTGgccgcccg > 2:127675/1‑148 (MQ=255) aCTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCACCCTGTGGGAGCGGGCGCGCCCGCGAATGAAGGCAACACGGTGTATGG‑CCCGGGTTTGCCCGGGTTCGCGGGCGGGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCgccag > 2:127678/1‑150 (MQ=255) | CAGTCGCGGCAGTGTTCGGCCAGGCTCTGGTCGTCACGGATCCAGTGAATTTCGATGGCCACAAGGCTCTCCCACTAACATTGGCGCGCAGTATATACGGCGCGGGCACTGCGGGTGAAACTGTCCCGCTTTTCGGGGGCAGTCCACCCTGTGGGAGCGGGCGCGCCCGCGAATGAAGGCAACACGGTGTATGG‑CCCGGGTTTGCCCGGGTTCGCGGGCGTGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAG > NC_002947/5212043‑5212299 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |