New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2103478 = | 18 (1.080) | 7 (0.430) +TT |
4/282 | 1.6 | 31.4% | intergenic (+49/+27) | msrC/PP_1878 | free methionine‑(R)‑sulfoxide reductase/hypothetical protein |
? | NC_002947 | 4898402 = | 13 (0.780) | intergenic (+68/‑140) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
GACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACG > NC_002947/4898256‑4898542 | gACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCGAAAGGCGCGGCCCGGGCGCGGTCCCCCGTAg > 2:326274/1‑150 (MQ=255) acaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTAGCGGGTAAATCCCCACCAACCGGCGCGGACCCGGGGCGGGCCCCCGGAGGAGCGGGt > 2:43896/1‑150 (MQ=255) gcatggccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgccggcctcttcgcttGTAGGAGCGGGTTTACCCGCGAagag < 1:379965‑M2/26‑1 (MQ=255) aGGGGGCGGCGTTCTGTTCTCGCTGTGGGAAGGGGTTGTTTCCCAAAGCGTGATTGCGCCTGCGCCGGCCTCTTCGCGGTTAAATCCGCTCCTACCGGCGCGGACCGTGCGCGGTCCCCCGTCGGAGCGGGTTTACCCGCGAAGAGGCCg < 1:349465/150‑1 (MQ=39) gagtgcggcgATCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg < 2:119464/146‑1 (MQ=255) ctgttctCGCTGTGGGATTGGTTTGTTTCCCAAAGCGTGATAGCGCCTGCGCGGGCCTCTTCGCGGTTAAATCCGCCCCTACCGGCGCGGACCGTGCGCGGTCCCCCGTCGGAGGGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAg < 2:81243/150‑1 (MQ=38) gggTTGTTCCCAAATGGGTTATTGGGCCTGCGCGGGCCTCTTCGCGGTTAAACCCGCTCCAACTGGGGGGGACGGTGGGGGGGCCCCCTTAGGTGGGGTTTTACCCGCTAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCAtttttt < 1:337138/150‑1 (MQ=255) gatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgccggcctcttcgcttGTAGGAGCGGGTTTACCCGCGAAGAGGc > 2:12987‑M2/72‑99 (MQ=255) gatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgccggcctcttcgcttGTAGGAGCGGGTTTACCCGCGAAGAGGc > 2:12993‑M2/72‑99 (MQ=255) gatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgccggcctcttcgcttGTAGGAGCGGGTTTACCCGCGAAGAGGc < 1:12987‑M2/28‑1 (MQ=255) gatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgccggcctcttcgcttGTAGGAGCGGGTTTACCCGCGAAGAGGc < 1:12993‑M2/28‑1 (MQ=255) cgcgGGTAAATCCGCTCCTACAGGCGTGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCa > 2:250257/1‑150 (MQ=255) gggTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAcc > 1:62178/1‑116 (MQ=255) gggTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAcc < 2:62178/116‑1 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAcc > 1:285579/1‑150 (MQ=255) ggCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAg < 2:149469/150‑1 (MQ=255) cGTGCGCGGTCCCCCGTTGTAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGAc < 1:285430/150‑1 (MQ=255) gtccgcgcctGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAac > 2:212209‑M2/11‑126 (MQ=255) gtccgcgcctGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAac < 1:212209‑M2/116‑1 (MQ=255) cgGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACg > 2:231339/1‑150 (MQ=255) | GACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACG > NC_002947/4898256‑4898542 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |