New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2579078 =	232 (0.840)	13 (0.050)	9/276	NT	5.4%	coding (1282/1776 nt)	PP_2259	sigma‑54 dependent transcriptional regulator
	?	NC_002947	2579150 =	226 (0.820)					coding (1210/1776 nt)	PP_2259	sigma‑54 dependent transcriptional regulator

CCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2579223‑2579078 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACC  >  NC_002947/2579150‑2579271                                                                                                                                                                                                                                                                              CCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTC                                                                                                                        <  2:180632/150‑1                                                           GATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGTGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTG                                                              >  2:2990258/1‑150                                                                       GACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGTGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGG                                                  >  2:5342590/1‑150                                                                          ATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGTGTCGCCAATCTCATCCAGAAACAGGAT                                                                                                <  1:8902062/101‑1                                                                          ATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGTGTCGCCAATCTCATCCAGAAACAGGAT                                                                                                >  2:8902062/1‑101                                                                              CACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGG                                           >  1:5364546/1‑150                                                                                   CCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGTGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGG                                                                             >  1:5128531/1‑111                                                                                   CCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGTGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGG                                                                             >  1:556019/1‑111                                                                                   CCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGTGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGG                                                                             >  1:556026/1‑111                                                                                   CCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGTGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGG                                                                             <  2:5128531/111‑1                                                                                   CCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGTGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGG                                                                             <  2:556019/111‑1                                                                                   CCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGTGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGG                                                                             <  2:556026/111‑1                                                                                                      TGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGA                   >  1:5267869/1‑150                                                                                                                       CGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCGGGTGGTGGGCGCCGGTGAACGCGCCGTTGTCCTAGCCGAACAGGTCCGACTCCACC  >  2:7423518/1‑150                                                                                                                                                                                                                                                                              CCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2579223‑2579078 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACC  >  NC_002947/2579150‑2579271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.