| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_002947 | 1,843,225 | (TGGCGCGCCAGTTCG)1→2 | 87.7% | coding (1611/2754 nt) | gacS ← | sensor protein GacS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1843211 = | 2 (0.110) | 14 (0.810) | 12/236 | NT | 87.7% | coding (1625/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 1843225 | 2 (0.120) | coding (1611/2754 nt) | gacS | sensor protein GacS | |||||
CAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACA > NC_002947/1843108‑1843354 | gggggccgccaccccctgcagcaactgggcgtcggtggcgaccaggctcacgctgaggccgcagtcttccagcgggtgctccagtgcctggcgcgccagtgcgTGGGGCGCCAGTTCGTGGCCATCGACAATggcg > 1:237081‑M1/104‑136 (MQ=255)ggcggcctgcaccccctgcagcaactggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcggcagttcgTGGGGCGCCCGGTCGTGGGGAGCGACAAAggcg < 2:263277‑M1/33‑1 (MQ=255) ggcctgcaccccctgcagcaactggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCa > 1:128645‑M1/101‑136 (MQ=255) caccccctgcagcaactggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCAcggcgg > 1:237979‑M1/95‑136 (MQ=255) gggggcCGCCACCCCCTGCAGCAACTGGGCGTCGGTGGCGACCAGGCTCACGCTGAGGCCGCAGTCTTCCAGCGGGTGCTCCAGTGCCTGGCGCGCCAGTGCGtggggcgccagttcgtggccatcgacaatggcg > 1:237081‑M2/1‑103 (MQ=255) ggcggcCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGGCAGTTCGtggggcgcccggtcgtggggagcgacaaaggcg < 2:263277‑M2/136‑34 (MQ=255) ggcCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgcgccagttcgtggccatcgacaatggcggca > 1:128645‑M2/1‑100 (MQ=255) cACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgcgccagttcgtggccatcgacaatggcggcacggcgg > 1:237979‑M2/1‑94 (MQ=255) gtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGt > 2:49364‑M1/77‑136 (MQ=255) aactggctcacgctgcggccgcagttttccagctggtgctcctgtgcgtggcgcgcatgttggTGGGGGGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCgg > 1:94112‑M1/64‑136 (MQ=255) gTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggt > 2:49364‑M2/1‑76 (MQ=255) gctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCg > 2:105964‑M1/59‑136 (MQ=255) ctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgcctgttcgGGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGt > 1:159917‑M1/58‑136 (MQ=255) gctgaggccgcagtcttccagctggtgctccagtgcctggcgcgcctgttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGa > 2:266769‑M1/53‑136 (MQ=255) aaCTGGCTCACGCTGCGGCCGCAGTTTTCCAGCTGGTGCTCCTGTGCGTGGCGCGCATGTTGGtggggggccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcgg > 1:94112‑M2/1‑63 (MQ=255) ggccgcagtcttcccgctggggcccccgtgccgggcgcgccagttcgGGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCtt > 2:4558‑M1/48‑136 (MQ=255) ggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCtt > 2:555223‑M1/48‑136 (MQ=255) gcagtcttccagctggtgctccagtgcctggcgcgccagttcgTGGCGCGCCAGTTGGTGGGCATCGACAATGGCGGCACGGCGGCCCCGCAATTGCTGCGGTGGGAGCGCGTCGGCCTCGTCATGAGCCGtgggg < 2:145123‑M1/93‑2 (MQ=255) gCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcg > 2:105964‑M2/1‑58 (MQ=255) cTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCTGTTCGgggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgt > 1:159917‑M2/1‑57 (MQ=255) gCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCTGTTCGtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatga > 2:266769‑M2/1‑52 (MQ=255) tcctgcgggtgctcctgtgccgggcgcgcctgtgggGGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGa > 1:221088‑M1/37‑136 (MQ=255) tccagctggtgctccagtgcctggcgcgccagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGa > 1:238578‑M1/37‑136 (MQ=255) ggCCGCAGTCTTCCCGCTGGGGCCCCCGTGCCGGGCGCGCCAGTTCGgggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagcctt > 2:4558‑M2/1‑47 (MQ=255) ggCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagcctt > 2:555223‑M2/1‑47 (MQ=255) gCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgcgccagttggtgggcatcgacaatggcggcacggcggccccgcaattgctgcggtgggagcgcgtcggcctcgtcatgagccgtgggg < 2:145123‑M2/136‑94 (MQ=255) tCCTGCGGGTGCTCCTGTGCCGGGCGCGCCTGTGGGgggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagccttgggcaggttga > 1:221088‑M2/1‑36 (MQ=255) tCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagccttgggcaggttga > 1:238578‑M2/1‑36 (MQ=255) tgcggggCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCggg < 1:441011/131‑1 (MQ=255) cAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGaca < 2:541660/136‑1 (MQ=255) | CAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACA > NC_002947/1843108‑1843354 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |