Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	5258594	5258604	11	2 [1]	[1] 2	PP_5703	type III effector protein HopJ

GAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGCGACCAGGAAGCGCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCAT  >  NC_002947/5258600‑5258740      |                                                                                                                                        gagaATGCGGCAGGGCAGAACGATGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGCGACCAGGAAGCGCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCg       <  2:293623/136‑1 (MQ=255)      tGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGCGACCAGGAAGCGCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCAt  <  1:126972/136‑1 (MQ=255)      |                                                                                                                                        GAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGCGACCAGGAAGCGCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCAT  >  NC_002947/5258600‑5258740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑