| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3385530 | 15 (0.890) | 19 (1.130) | 13/264 | 0.2 | 71.7% | coding (501/546 nt) | PP_2985 | hypothetical protein |
| ? | NC_002947 | = 4459341 | 0 (0.000) | coding (13/696 nt) | pcaI | 3‑oxoadipate CoA‑transferase subunit A | |||||
TTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3385400‑3385530‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGAAATGGCTTGCTGACTTTCGCTATAGCGTG < NC_002947/4459341‑4459219 TTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTA > 1:215704/1‑136TTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTA > 1:428038/1‑136TTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTA > 1:94859/1‑136 CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTTAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGACTTATCTCGGCATGACGCCTTTTATTGAT > 2:169310/1‑136 CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGAT > 1:321073/1‑136 CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGAT > 2:326668/1‑136 cGCGATGCGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCT < 1:201392/135‑1 AGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACTAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCT < 2:360968/136‑1 GCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTACTGGTTGTTCg > 2:432536/1‑135 GCGCGAAGCAGTCTTTGATGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCC > 2:337914/1‑136 CAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTG > 2:17696/1‑136 TTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGA > 2:7231/1‑136 ATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCG > 1:194562/1‑136 TACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGA < 2:88890/136‑1 AATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGT < 1:17696/136‑1 AGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGA > 1:334684/1‑136 CCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGAAATGGCTTGCTGACTTTCGCTA > 1:369200/1‑136 TTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGAAATGGCTTGCTGACTTTCGCTATA < 1:7231/136‑1 TCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGAAATGGCTTGCTGACTTTCGCTATAGCGTG < 2:217597/136‑1 TTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3385400‑3385530‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGAAATGGCTTGCTGACTTTCGCTATAGCGTG < NC_002947/4459341‑4459219 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |