New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3385530	15 (0.890)	19 (1.130)	13/264	0.2	71.7%	coding (501/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 4459341	0 (0.000)					coding (13/696 nt)	pcaI	3‑oxoadipate CoA‑transferase subunit A

TTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCG  >  NC_002947/3385400‑3385661                                                                                                                                   |                                                                                                                                    ttCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCtttta                                                                                                                                >  1:215704‑M1/1‑131 (MQ=255) ttCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCtttta                                                                                                                                >  1:94859‑M1/1‑131 (MQ=255) ttCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCtttta                                                                                                                                >  1:428038‑M1/1‑131 (MQ=255) ttCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATATTTGCCTTATCTCGGCATGACCCCATAcc                                                                                                                                >  2:16244/1‑136 (MQ=255)      cAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTTAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGACTTATCTCGGCATGACGCCttttattgat                                                                                                                           >  2:169310‑M1/1‑126 (MQ=255)      cAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgat                                                                                                                           >  1:321073‑M1/1‑126 (MQ=255)      cAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgat                                                                                                                           >  2:326668‑M1/1‑126 (MQ=255)      cAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCAt                                                                                                                           >  1:364385/1‑136 (MQ=255)                 tGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCt                                                                                                                <  2:36592/136‑1 (MQ=255)                    cgcGATGCGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcct                                                                                                             <  1:201392‑M1/135‑25 (MQ=255)                    aGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACTAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcct                                                                                                             <  2:360968‑M1/136‑25 (MQ=255)                     gCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTTAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGa                                                                                                            <  1:43018/136‑1 (MQ=255)                             gcgcGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctactggttgttcg                                                                                                    >  2:432536‑M1/1‑103 (MQ=255)                             gcgcGAAGCAGTCTTTGATGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcc                                                                                                    >  2:337914‑M1/1‑103 (MQ=255)                                     cAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttg                                                                                            >  2:17696‑M1/1‑95 (MQ=255)                                          tttGCTGAGCAGAGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTtct                                                                                       <  2:75774/136‑1 (MQ=255)                                                         ttCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccgga                                                                        >  2:7231‑M1/1‑75 (MQ=255)                                                         ttCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCa                                                                        <  1:333533/136‑1 (MQ=255)                                                              aTCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcg                                                                   >  1:194562‑M1/1‑70 (MQ=255)                                                              aTCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCa                                                                   >  1:49093/1‑136 (MQ=255)                                                                 tACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtga                                                                <  2:88890‑M1/136‑70 (MQ=255)                                                                      gTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTAtt                                                           <  1:392531/136‑1 (MQ=255)                                                                       tttAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTg                                                          <  2:422184/136‑1 (MQ=255)                                                                        ttAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGc                                                         >  2:26304/1‑136 (MQ=255)                                                                            aTACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGa                                                     <  2:357261/136‑1 (MQ=255)                                                                              aCAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACt                                                   <  1:26304/136‑1 (MQ=255)                                                                                aaTAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcgatggggcctgt                                                 <  1:17696‑M1/136‑85 (MQ=255)                                                                                          agaACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcgatggggcctgtcagcacttga                                       >  1:334684‑M1/1‑42 (MQ=255)                                                                                               gAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCAGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGc                                  >  2:344383/1‑136 (MQ=255)                                                                                                                ccTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcgatggggcctgtcagcacttgaaatggcttgctgactttcgcta                 >  1:369200‑M1/1‑20 (MQ=255)                                                                                                                  ttATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcgatggggcctgtcagcacttgaaatggcttgctgactttcgctata               <  1:7231‑M1/136‑119 (MQ=255)                                                                                                                       tcGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcgatggggcctgtcagcacttgaaatggcttgctgactttcgctatagcgtg          <  2:217597‑M1/136‑124 (MQ=255)                                                                                                                               aCCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATcgcg  <  2:391753/136‑1 (MQ=255)                                                                                                                               aCCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATcgcg  <  2:73450/136‑1 (MQ=255)                                                                                                                                   |                                                                                                                                    TTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCG  >  NC_002947/3385400‑3385661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.