New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3368518 =	9 (0.540)	11 (0.650)	11/264	0.3	66.7%	intergenic (+219/‑142)	PP_2962/PP_2964	alcohol dehydrogenase/transposase
	?	NC_002947	4459337 =	2 (0.120)					coding (9/696 nt)	pcaI	3‑oxoadipate CoA‑transferase subunit A

GTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGC  >  NC_002947/3368389‑3368652                                                                                                                                  |                                                                                                                                       cgggcaccggtggcaatgaggccatcgatcagctcggacggcatgccagccgtgccgaagccaccgaccatgatggtcgaaccgtcggtaatcccttccaccgcgctggcgatggactcgtacgttttaGGGGTTa                                                                                                                                  >  2:253886‑M1/130‑136 (MQ=255)                      ggTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAAtt                                                                                                             >  1:362915/1‑136 (MQ=255)                          ccGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGa                                                                                                         <  1:243102/136‑1 (MQ=255)                          ccGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACCTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGa                                                                                                         <  1:4433/136‑1 (MQ=255)                                                               aCTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTc                                                                                                    <  1:150078/104‑1 (MQ=255)                                                               aCTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTc                                                                                                    >  2:150078/1‑104 (MQ=255)                                                                 ttCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCga                                                                  >  2:37294/1‑136 (MQ=255)                                                                     catgatggtcgaaccgtcggtaatcccttccaccgcgctggcgatggactcgtacgttttaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAgg                                                              >  2:332039‑M1/62‑136 (MQ=255)                                                                       gCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTc                                                                                                <  1:267961/100‑1 (MQ=255)                                                                       gCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTc                                                                                                >  2:267961/1‑100 (MQ=255)                                                                                 accgtcggtaatcccttccaccgcgctggcgatggactcgtacgttttaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCt                                                  >  1:7503‑M1/50‑136 (MQ=255)                                                                                                  aGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTgg                                 <  2:350414/136‑1 (MQ=255)                                                                                                   caccgcgctggcgatggactcgtacgttttaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAATGTTATTCGAGAGGCCGTg                                                         >  1:439708‑M1/32‑111 (MQ=255)                                                                                                   caccgcgctggcgatggactcgtacgttttaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAATGTTATTCGAGAGGCCGTg                                                         <  2:439708‑M1/80‑1 (MQ=255)                                                                                                          ctggcgatggactcgtacgttttaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGt                         <  2:39304‑M1/112‑1 (MQ=255)                                                                                                           tggcgatggactcgtacgttttaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTc                        <  1:354249‑M1/113‑1 (MQ=255)                                                                                                                     ctcgtacgttttaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATg              <  1:141464‑M1/123‑1 (MQ=255)                                                                                                                           cgttttaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTg        >  2:98221‑M1/8‑136 (MQ=255)                                                                                                                             ttttaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGcc      >  1:39304‑M1/6‑136 (MQ=255)                                                                                                                                 aGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGc  <  1:62043‑M1/135‑1 (MQ=255)                                                                                                                                  |                                                                                                                                       GTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGC  >  NC_002947/3368389‑3368652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.