| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3368518 = | 9 (0.540) | 11 (0.650) | 11/264 | 0.3 | 66.7% | intergenic (+219/‑142) | PP_2962/PP_2964 | alcohol dehydrogenase/transposase |
| ? | NC_002947 | 4459337 = | 2 (0.120) | coding (9/696 nt) | pcaI | 3‑oxoadipate CoA‑transferase subunit A | |||||
GTTGCCCTATCTTGCGGCACGCTATAGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTG > NC_002947/4459202‑4459472 | gcgaggcaaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataacccct < 1:62043‑M2/1‑1 (MQ=255) ggcaaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTaaaa > 1:39304‑M2/132‑136 (MQ=255) cccTATCTTGCGGCACGCTATAGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATaaaa > 2:334684/1‑136 (MQ=255) cccTATCTTGCGGCACGCTATAGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATaaaa > 2:215704/1‑136 (MQ=255) caaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAACg > 2:98221‑M2/130‑136 (MQ=255) catcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAACGTACGAg < 1:141464‑M2/13‑1 (MQ=255) cACGCTATAGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccga < 2:217597‑M2/136‑14 (MQ=255) tataGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataa < 1:7231‑M2/136‑19 (MQ=255) gacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAACGTACGAGTCCATCGCCa < 1:354249‑M2/23‑1 (MQ=255) acggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAACGTACGAGTCCATCGCCAg < 2:39304‑M2/24‑1 (MQ=255) taGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataagg > 1:369200‑M2/1‑116 (MQ=255) tCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttct > 1:334684‑M2/1‑94 (MQ=255) agcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGt > 1:7503‑M2/88‑136 (MQ=255) cacggcctctcgaataacattttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAACGTACGAGTCCATCGCCAGCGCGGTg < 2:439708‑M2/31‑1 (MQ=255) cacggcctctcgaataacattttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAACGTACGAGTCCATCGCCAGCGCGGTg > 1:439708‑M2/81‑111 (MQ=255) aCAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctatt < 1:17696‑M2/136‑53 (MQ=255) cctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATg > 2:332039‑M2/76‑136 (MQ=255) tCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagta < 2:88890‑M2/136‑68 (MQ=255) cgcgCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagat > 1:194562‑M2/1‑66 (MQ=255) tCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaa > 2:7231‑M2/1‑61 (MQ=255) caACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactg > 2:17696‑M2/1‑41 (MQ=255) ggAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcatcaaagactgcttcgcgc > 2:337914‑M2/1‑33 (MQ=255) cgaACAACCAGTAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgc > 2:432536‑M2/2‑33 (MQ=255) aGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgccgcatcgcg < 1:201392‑M2/136‑113 (MQ=255) aGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattagttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgct < 2:360968‑M2/136‑113 (MQ=255) taaccccTAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCcg > 2:253886‑M2/8‑136 (MQ=255) aTCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattg > 2:326668‑M2/1‑10 (MQ=255) aTCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattg > 1:321073‑M2/1‑10 (MQ=255) aTCAATAAAAggcgtcatgccgagataagtcaaaaattaggacattcgttctctaagctattgtattaaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattg > 2:169310‑M2/1‑10 (MQ=255) tAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 1:94859‑M2/1‑5 (MQ=255) tAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 1:428038‑M2/1‑5 (MQ=255) tAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 1:215704‑M2/1‑5 (MQ=255) | GTTGCCCTATCTTGCGGCACGCTATAGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTG > NC_002947/4459202‑4459472 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |