| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | NC_002947 | 3,827,335 | Δ51 bp | 100% | coding (626‑676/1020 nt) | ptxS ← | 2‑ketogluconate utilization repressor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 3827335 | 3827385 | 51 | 13 [0] | [0] 12 | ptxS | 2‑ketogluconate utilization repressor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3827334 | 0 (0.000) | 10 (1.100) | 7/230 | NT | 100% | coding (677/1020 nt) | ptxS | 2‑ketogluconate utilization repressor |
| ? | NC_002947 | 3827386 = | 0 (0.000) | coding (625/1020 nt) | ptxS | 2‑ketogluconate utilization repressor | |||||
ACCAGGTTGCGCCCGGCCTCGAGCAGCGCCCGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGATTTCCAGTACCTGCTGACGCATGCCTGGCCGTCGGCTGATCGACGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGGTAGCC > NC_002947/3827199‑3827458 | aCCAGGTTGCGCCCGGCCTCGAGCAGCGCCCGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGA > 1:158851‑M1/1‑136 (MQ=255) ttGCGCCCGGCCTCGAGCAGCGCCCGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcct < 2:67815‑M1/136‑7 (MQ=255) gtgCGCCCGGCCTCGAGCAGCGCCCGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcct < 2:276096‑M1/135‑7 (MQ=255) aCGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcactga > 2:239372‑M1/1‑85 (MQ=255) aCGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcactga > 2:240775‑M1/1‑85 (MQ=255) gACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggc > 1:231302‑M1/1‑57 (MQ=255) cttgaCCTCTGTGGGCAAGAAAGGAAGCGAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacgcgctcctggcgtgtactggtgcgatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttg < 1:101523‑M1/134‑83 (MQ=255) ttgACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatggctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgc < 2:140012‑M1/135‑84 (MQ=255) tGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgca < 2:217561‑M1/136‑85 (MQ=255) gCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcactgaccgccaggatgtcgcggtagccctgggcttgcaggtggtccagggcctgctcgactg < 1:240775‑M1/136‑109 (MQ=255) gCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccacgcgcgaacttgtgccatcgaggggttcactgaccgcctggatgtcgcggtagccctgggcttgcaggtggtccagggcctgctcgactg < 1:239372‑M1/136‑109 (MQ=255) gCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgcaggtggtccagggcctgctcgactgcgtcagcattgtccag > 1:49973‑M1/1‑12 (MQ=255) gCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggaagtcgcggtagccctgggcttgcaggtggtcgagggcctgctcgactgcggcagcattgtccag > 1:43204‑M1/1‑12 (MQ=255) | ACCAGGTTGCGCCCGGCCTCGAGCAGCGCCCGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGATTTCCAGTACCTGCTGACGCATGCCTGGCCGTCGGCTGATCGACGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGGTAGCC > NC_002947/3827199‑3827458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |