New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2527569 =	138 (0.910)	9 (0.060)	5/272	NT	5.9%	coding (627/768 nt)	fadBA	type II 3‑hydroxyacyl‑CoA dehydrogenase
	?	NC_002947	2527613 =	150 (1.000)					coding (671/768 nt)	fadBA	type II 3‑hydroxyacyl‑CoA dehydrogenase

CGCTCTCCTTACTTGGCAGCCATGCGCAGCGCACCGTCGAGGCGGATGACCTCACCGTTGAGCATGCTGTTCTCGATGATGTGGCGGGCCAGCGCGGCGTATTCCTGCGGGCGGCCCAAGCGGGGCGGGAACGGCACGCCGGCAGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2527718‑2527569 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAGCGAACATGACCCTCGCCAATGACCCCATCGTTATCGTCAGCGCC  >  NC_002947/2527613‑2527760                                                                                                                                                                                                                                                                                                            CGCTCTCCTTACTTGGCAGCCATGCGCAGCGCACCGTCGAGGCGGATGACCTCACCGTTGAGCATGCTGTTCTCGAGGATGTGGCGGGCCAGCGCGGCGTATTCCTGCGGGCGGCCCAAGCGGGGCGGGAACGGCACGCCGGCAGCCAGC                                                                                                                                                      <  1:730650/150‑1                                                                                                   GTATTCCTGCGGGCGGCCCAAGCGGGGCGGGAACGGCACGCCGGCAGCCAGCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAA                                                    >  1:1457291/1‑150                                                                                                         CTGCGGGCGGCCCAAGCGGGGCGGGAACGGCACGCCGGCAGCCAGCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAG                                              >  1:2156656/1‑150                                                                                                         CTGCGGGCGGCCCAAGCGGGGCGGGAACGGCACGCCG‑‑‑‑‑‑‑GCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAGCGAACAT                                       >  1:1160122/1‑150                                                                                                         CTGCGGGCGGCCCAAGCGGGGCGGGAACGGCACGCCG‑‑‑‑‑‑‑GCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAGCGAACAT                                       >  1:1160371/1‑150                                                                                                         CTGCGGGCGGCCCAAGCGGGGCGGGAACGGCACGCCG‑‑‑‑‑‑‑GCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAGCGAACAT                                       >  1:5072191/1‑150                                                                                                         CTGCGGGCGGCCCAAGCGGGGCGGGAACGGCACGCCG‑‑‑‑‑‑‑GCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAGCGAACAT                                       >  2:1955311/1‑150                                                                                                          TGCGGGCGGCCCAAGCGGGGCGGGAACGGCACGCCGGCAGCCAGCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAGC                                             >  2:1299363/1‑150                                                                                                           GCGGGCGGCCCAAGCGGGGCGGGAACGGCACGCCG‑‑‑‑‑‑‑GCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAGCGAACATGA                                     >  1:1255252/1‑150                                                                                                              GGCGGCCCAAGCGGGGCGGGAACGGCACGCCGGCAGCCCGCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAGCGAAC                                         >  1:1463561/1‑150                                                                                                                                                     GCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAGCGACCATGACCCTCGCCAATGACCCCATCGTTATCGTCAGCGCC  >  2:3991912/1‑150                                                                                                                                                     GCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAGCGAACATGACCCTCGCCAATGACCCCATCGTTATCGTCAGCGCC  >  1:2680377/1‑150                                                                                                                                                     GCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAGCGAACATGACCCTCGCCAATGACCCCATCGTTATCGTCAGCGCC  >  2:1601594/1‑150                                                                                                                                                     GCAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCAACCGCCTCGACTGTGCGCTGCGCATGTCTGCCAAGTAAGGAGAGCGAACATGACCCTCGCCAATGACCCCATCGTTATCGTCAGCGCC  >  2:1601684/1‑150                                                                                                                                                                                                                                                                                                            CGCTCTCCTTACTTGGCAGCCATGCGCAGCGCACCGTCGAGGCGGATGACCTCACCGTTGAGCATGCTGTTCTCGATGATGTGGCGGGCCAGCGCGGCGTATTCCTGCGGGCGGCCCAAGCGGGGCGGGAACGGCACGCCGGCAGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2527718‑2527569 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcAGGAATACGCCGCGCTGGCCCGCCACATCATCGAGAACAGCATGCTCAACGGTGAGGTCATCCGCCTCGACGGTGCGCTGCGCATGGCTGCCAAGTAAGGAGAGCGAACATGACCCTCGCCAATGACCCCATCGTTATCGTCAGCGCC  >  NC_002947/2527613‑2527760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.