| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4553907 = | 66 (0.430) | 4 (0.030) | 4/210 | NT | 11.4% | intergenic (+35/+146) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family |
| ? | NC_002947 | 4554024 = | 12 (0.100) | intergenic (+152/+29) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family | |||||
AGCGTGATCTTGCGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4554088‑4553907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcccgatcgcgacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAG > NC_002947/4554024‑4554170 AGCGTGATCTTGCGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTG < 1:4001181/150‑1 CGTGATCTTGCGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCG < 1:499278/150‑1 CGTGATCTTGCGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCG < 1:4944075/150‑1 TGATCTTGCGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGC < 2:1677828/150‑1 ATCTTGCGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCC < 1:3169783/150‑1 ATCTTGCGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCC < 1:4345919/150‑1 gTGCGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCACAGCGGCCCcag < 2:4715495/149‑4 TGCGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATC < 2:1624038/150‑1 GCGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGAgca < 1:2233501/150‑4 GCGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCACAGCGGCCCcagca < 2:1187138/150‑6 CGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGC < 1:275042/150‑1 TCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGTTCGGGCCGCGAAGCGGCCCCCCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAA < 2:2020902/150‑1 TGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTCGGGCCGCACAGCGGCCCcagca < 2:1938590/136‑6 TGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTCGGGCCGCACAGCGGCCCcagca > 1:1938590/1‑131 GCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCG > 1:1091837/1‑150 GCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCA > 1:4483585/1‑150 GCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGC > 2:1419755/1‑150 GAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTG > 2:1454646/1‑150 ATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGG > 1:4225233/1‑51 ATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGG < 2:4225233/51‑1 GCGGCCCGATCGCGACACAAGGCCGCTCCCACCAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCAGTCTCGCAGGCCAGGGCAGACAGCACCTCGCCG > 2:4396444/1‑150 GCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCG > 2:3671340/1‑150 GGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCC > 1:536733/1‑150 GGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCC > 1:882159/1‑150 CCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGT > 2:907809/1‑150 ATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAG > 1:2366487/1‑150 GCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAA > 1:4074846/1‑150 GACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACT > 2:4415142/1‑150 GACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCACCGCAAGAACACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCAAGTCAGACATAACCTCGCCGCCGTTGAGCAACT > 2:4469269/1‑150 ACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAA > 2:132768/1‑150 AGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCT > 1:1147471/1‑150 CGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTA > 1:1549957/1‑150 TCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACC > 2:3053831/1‑150 CACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAA > 1:879005/1‑150 CACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAA > 1:2499529/1‑150 ACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAG > 2:3160473/1‑150 ACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAG > 1:3052589/1‑150 ACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAG > 2:92739/1‑150 AGCGTGATCTTGCGGGGGATCGGGCTGGAGCCGTGATCCGGCATTCCAGGTGGACGTGGTCTTTTTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4554088‑4553907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcccgatcgcgacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAG > NC_002947/4554024‑4554170 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |