| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4553907 = | 66 (0.430) | 4 (0.030) | 4/210 | NT | 11.4% | intergenic (+35/+146) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family |
| ? | NC_002947 | 4554024 = | 12 (0.100) | intergenic (+152/+29) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family | |||||
TTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAGTCA > NC_002947/4553920‑4554173 | TTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGGGGGGCCGCTTCGCGGCCCGAACGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGa < 2:2020902‑M1/150‑1 (MQ=255) gcgatcgggccgcgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggcccgatcgcgacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCg > 1:1091837‑M2/98‑150 (MQ=255) GCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCg < 1:275042‑M1/150‑1 (MQ=255) tgctgGGGCCGCTGTGCGGCCCGAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCa < 2:1938590‑M1/131‑1 (MQ=255) tgctgGGGCCGCTGTGCGGCCCGAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCa > 1:1938590‑M1/6‑136 (MQ=255) tgctgGGGCCGCTGTGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGc < 2:1187138‑M1/145‑1 (MQ=255) tgcTCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGc < 1:2233501‑M1/147‑1 (MQ=255) GATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCa < 2:1624038‑M1/150‑1 (MQ=255) ctgGGGCCGCTGTGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGcac < 2:4715495‑M1/147‑2 (MQ=255) GGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGAt < 1:4345919‑M1/150‑1 (MQ=255) GGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGAt < 1:3169783‑M1/150‑1 (MQ=255) gccgcgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggcccgatcgcgacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCa > 1:4483585‑M2/90‑150 (MQ=255) GCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCa < 2:1677828‑M1/150‑1 (MQ=255) CGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACg < 1:4944075‑M1/150‑1 (MQ=255) CGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACg < 1:499278‑M1/150‑1 (MQ=255) gcgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggcccgatcgcgacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGc > 2:1419755‑M2/87‑150 (MQ=255) CACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCt < 1:4001181‑M1/150‑1 (MQ=255) gaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggcccgatcgcgacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTg > 2:1454646‑M2/85‑150 (MQ=255) cccAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGt > 1:1872423/1‑150 (MQ=255) ccAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTc > 2:5018828/1‑150 (MQ=255) agcagTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCACGATCACGCTGGTCACCGTCTg > 2:2371121/1‑150 (MQ=255) cgcgATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATtctc > 2:133167/1‑150 (MQ=255) tACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAgg > 1:582755/1‑150 (MQ=255) aGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCa > 2:2893013/1‑150 (MQ=255) aCATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATg > 1:1823008/1‑150 (MQ=255) aTCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGAcc > 2:2559292/1‑57 (MQ=255) aTCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGAcc < 1:2559292/57‑1 (MQ=255) aTCGAGGGGCCGCTTCGCGGCCCGATCGCGAAACAAGTCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTCGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTc > 2:4444782/1‑150 (MQ=255) aGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCAGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGAc > 1:1800705/1‑150 (MQ=255) cGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCAcc > 1:4457322/1‑150 (MQ=255) gcggcccgatcgcgacacaaggccgctcccaccAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCAGTCTCGCAGGCCAGGGCAGACAGCACCTcgccg > 2:4396444‑M2/34‑150 (MQ=255) gcggcccgatcgcgacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTcgccg > 2:3671340‑M2/34‑150 (MQ=255) ggcccgatcgcgacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCgccgcc > 1:536733‑M2/32‑150 (MQ=255) ggcccgatcgcgacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCgccgcc > 1:882159‑M2/32‑150 (MQ=255) cccgatcgcgacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGt > 2:907809‑M2/30‑150 (MQ=255) atcgcgacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAg > 1:2366487‑M2/26‑150 (MQ=255) gcgacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCaa > 1:4074846‑M2/23‑150 (MQ=255) gacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACt > 2:4415142‑M2/21‑150 (MQ=255) gacacaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCACCGCAAGAACACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCAAGTCAGACATAACCTCGCCGCCGTTGAGCAACt > 2:4469269‑M2/21‑150 (MQ=255) acaaggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGaa > 2:132768‑M2/18‑150 (MQ=255) aggccgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCt > 1:1147471‑M2/15‑150 (MQ=255) cgctcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTa > 1:1549957‑M2/11‑150 (MQ=255) tcccacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAAcc > 2:3053831‑M2/8‑150 (MQ=255) cacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCaaa > 1:879005‑M2/5‑150 (MQ=255) cacaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCaaa > 1:2499529‑M2/5‑150 (MQ=255) acaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAg > 2:3160473‑M2/4‑150 (MQ=255) acaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAg > 1:3052589‑M2/4‑150 (MQ=255) acaAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAg > 2:92739‑M2/4‑150 (MQ=255) aaaaGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAGTCa < 1:1187138/150‑1 (MQ=255) | TTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAGTCA > NC_002947/4553920‑4554173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |