New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 699806	0 (0.000)	5 (0.030)	4/264	NT	17.2%	intergenic (+196/‑48)	PP_t06/PP_23SD	tRNA‑Ala/23S ribosomal RNA
	?	NC_002947	5312649 =	48 (0.330)					intergenic (‑90/+145)	PP_23SG/PP_t51	23S ribosomal RNA/tRNA‑Ala

AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCGGCGAATGTCGTCTTCACAGTATAACCAGATTGCTTGGGGTTATATGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATAAGCTTTGGGGAGTCGGCAAACAGACTGTG  >  NC_002947/699657‑699955                                                                                                                                                      |                                                                                                                                                      aGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTT                                                                                                                                                       <  1:220202‑M1/150‑1 (MQ=255) aGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTT                                                                                                                                                       >  1:1346007‑M1/1‑150 (MQ=255)  gCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc                                                                                                                                                      >  1:206014/1‑150 (MQ=14)  gCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc                                                                                                                                                      >  1:4662229/1‑150 (MQ=14)  gCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc                                                                                                                                                      >  2:780068/1‑150 (MQ=14)  gCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATATGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc                                                                                                                                                      >  1:3895339/1‑150 (MQ=14)   cTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCg                                                                                                                                                     <  1:1123930/150‑1 (MQ=11)                                                                                                    ggCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcc                                                                                                                                              >  1:4976268‑M1/1‑51 (MQ=255)                                                                                                    ggCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcc                                                                                                                                              <  2:4976268‑M1/60‑10 (MQ=255)                                                                                                        aaGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagtcagaaatcaacattc                                                >  2:130878‑M1/1‑47 (MQ=255)                                                                                                           gTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagtcagaaatcaacattcgac                                             >  2:3409587‑M1/1‑44 (MQ=255)                                                                                                                aTTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTaccttagcctgatccaccagcagtgaaactggtgttcagcctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgagctgaa                                        >  1:1144075‑M1/1‑39 (MQ=255)                                                                                                                                                   ttttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagtcagaaatcaacattcgacgcgaatgctcatttctgagtttgatcaaggtaaagcaagt     >  2:290476‑M1/1‑4 (MQ=255)                                                                                                                                                   ttttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagtcagaaatcaacattcgacgcgaatgctcatttctgagtttgatcaaggtaaagcaagt     <  2:3969174‑M1/150‑147 (MQ=255)                                                                                                                                                    tttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagtcagaaatcaacattcgacgcgaatgctcatttctgagtttgatcaaggtaaagcaagtg    <  1:3291713‑M1/150‑148 (MQ=255)                                                                                                                                                      taccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagtcagaaatcaacattcgacgcgaatgctcatttctgagtttgatcaaggtaaagcaagtggt  <  2:1904643‑M1/150‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCGGCGAATGTCGTCTTCACAGTATAACCAGATTGCTTGGGGTTATATGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATAAGCTTTGGGGAGTCGGCAAACAGACTGTG  >  NC_002947/699657‑699955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.