Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	4971443	4971910	468	2 [1]	[1] 2	fliC	flagellin

CTCGGCCAGACCCAAGGCAGTGCTCAAGACGTCATCAGTGCTGGCATCGATGGTGAATGCCTGGGTGCCGTCGAGCTTCAGTGCACCAGTGGCGCTGTCAATGCTAGCGGTAACACCGGTATTGCTAGTTTCCAGGTTGATATTGTCAACCACATCCTGCAGGGTGTCGCCTGCCGCAGCAGCGATGGTGGTGGTGGTGGTACCAACGTTCAGCACCAAGTTACCGGCAGCAGCACCGATGG  >  NC_002947/4971307‑4971548                                                                                                                                        |                                                                                                           cTCGGCCAGACCCAAGGCAGTGCTCAAGACGTCATCAGTGCTGGCATCGATGGTGAATGCCTGGGTGCCGTCGAGCTTCAGTGCACCAGTGGCGCTGTCAATGCTAGCGGTAACACCGGTATTGCTAGTTTCCAgg                                                                                                            <  2:32012/136‑1 (MQ=255)                                                                                                           gCGGTAACACCGGTATTGCTAGTTTCCAGGTTGATATTGTCAACCACATCCTGCAGGGTGTCGCCTGCCGCAGCAGCGATGGTGGTGGTGGTGGTACCAACGTTCAGCACCAAGTTACCGGCAGCAGCACCGATgg  >  1:197405/1‑136 (MQ=255)                                                                                                                                        |                                                                                                           CTCGGCCAGACCCAAGGCAGTGCTCAAGACGTCATCAGTGCTGGCATCGATGGTGAATGCCTGGGTGCCGTCGAGCTTCAGTGCACCAGTGGCGCTGTCAATGCTAGCGGTAACACCGGTATTGCTAGTTTCCAGGTTGATATTGTCAACCACATCCTGCAGGGTGTCGCCTGCCGCAGCAGCGATGGTGGTGGTGGTGGTACCAACGTTCAGCACCAAGTTACCGGCAGCAGCACCGATGG  >  NC_002947/4971307‑4971548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑