New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3314135 =	47 (1.050)	3 (0.070)	3/262	2.6	6.3%	coding (405/894 nt)	PP_2912	hypothetical protein
	?	NC_002947	= 4151571	42 (0.940)					coding (57/453 nt)	PP_3654	leucine‑responsive regulatory protein
Rejected: Frequency below/above cutoff threshold.

CCGGGCCGAGCAGCACGTTGAACTCGGACAGGTCGCCATGCACCATTCCGGCGCACAGCATCAGCACGACCTGGCGAATGACGAAGGCGTGGAACGCGCGGGCATCCTCCGCTTCGAGGTGTACGTCGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3314265‑3314135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACAGGCGCCCGTCTTTTTGCAGCTCGGCAAGGATTTTTCGATCAGTTCTATCCATTGGG  <  NC_002947/4151571‑4151511                                                                                                                                                                                                  CCGGGCCGAGCAGCACGTTGAACTCGGACAGGTCGCCATGCACCATTCCGGCGCACAGCATCCGCACGACCTGGCGAATGACGAAGGCGTGGAACGCGCGGGCATCCTCCGCGTCGAGGTGTACGTCGTTCCGccg                                                          >  2:845220/1‑133                                                       ACAGCATCAGCACGACCAGGCGAATGACGAAGGCGTGGAACGCGCGGGCATCCTCCGCTACGAGGTGTACGTCGTTCCGACAGGCGCCCGTCATTTTGCAGCTCGACAAGGATTTTTCGATCAGTTCTATCCATat    >  2:406/1‑134                                                         AGCATCAGCACGACCTGGCGAATGACGAAGGCGTGGAACGCGCGGGCATCCTCCGCTTCGAGGTGTACGTCGTTCCGACAGGCGCCCGTCTTTTTGCAGCTCGGCAAGGATTTTTCGATCAGTTCTATCCATTGGG  <  1:406/136‑1                                                                                                                                                                                                  CCGGGCCGAGCAGCACGTTGAACTCGGACAGGTCGCCATGCACCATTCCGGCGCACAGCATCAGCACGACCTGGCGAATGACGAAGGCGTGGAACGCGCGGGCATCCTCCGCTTCGAGGTGTACGTCGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3314265‑3314135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACAGGCGCCCGTCTTTTTGCAGCTCGGCAAGGATTTTTCGATCAGTTCTATCCATTGGG  <  NC_002947/4151571‑4151511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.