New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3314135 =	47 (1.050)	3 (0.070)	3/262	2.6	6.3%	coding (405/894 nt)	PP_2912	hypothetical protein
	?	NC_002947	= 4151571	42 (0.940)					coding (57/453 nt)	PP_3654	leucine‑responsive regulatory protein
Rejected: Frequency below/above cutoff threshold.

CCGAAGTGGCAGCGCTGTTCCGTTTGGCCGCCGCAGGTGTGAGGGTGCCCAAGCCTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTCCGAGTTCAACGTGCTGCTCGGCCCGGACG  >  NC_002947/3314008‑3314268                                                                                                                                |                                                                                                                                      ccGAAGTGGCAGCGCTGTTCCGTTTGGCCGCCGCAGGTGTGAGGGTGCCCAAGCCTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGt                                                                                                                               <  1:464807/136‑1 (MQ=255)    aaGTGGCAGCGCTGTTCCGTTTGGCCGCCGCAGGTGTGAGGGTGCCCAAGCCTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTaca                                                                                                                            <  2:772638/136‑1 (MQ=255)      gTGGCAGCGCTGTTCCGTTTGGCCGCCGCAGGTGTGAGGGTGCCCAAGCCTTACTACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACAcc                                                                                                                          >  1:43319/1‑136 (MQ=255)       tGGCAGCGCTGTTCCGTTTGGCCGCCGCAGGTGTGAGGGTGCCCAAGCCTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCt                                                                                                                         >  1:499326/1‑136 (MQ=255)                  ttCCGTTTGGCCGCCGCAGGTGTGAGGGTGCCCAAGCCTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCggagg                                                                                                              <  1:271137/136‑1 (MQ=255)                        ttGGCCGCCGCAGGTGTGAGGGTGCCCAAGCCTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGccc                                                                                                        <  1:391147/136‑1 (MQ=255)                                     gtgtGAGGGTGCCCAAGCCTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGc                                                                                           <  1:584277/136‑1 (MQ=255)                                                   aaGCCTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGcc                                                                             >  1:1020786/1‑136 (MQ=255)                                                   aaGCCTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGcc                                                                             >  1:178688/1‑136 (MQ=255)                                                    aGCCTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCa                                                                            <  2:1047264/136‑1 (MQ=255)                                                    aGCCTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCa                                                                            <  2:1081664/136‑1 (MQ=255)                                                       cTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCTCGCGCGTTCCACGCCTTCGTCATTCGCCAGGt                                                                         >  1:166207/1‑136 (MQ=255)                                                             aCTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGcg                                                                   >  1:677933/1‑135 (MQ=255)                                                             aCTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCt                                                                   >  1:654666/1‑136 (MQ=255)                                                                 ccAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATg                                                               <  1:260735/136‑1 (MQ=255)                                                                   cccaatggatagaactgatcgaaaaatccttgccgagctgcaaaaagacgggcgcctgtcgGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCt                                                             <  1:406‑M1/75‑1 (MQ=255)                                                                   aGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCt                                                             >  1:255441/1‑136 (MQ=255)                                                                   aGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCt                                                             >  1:555839/1‑136 (MQ=255)                                                                   aGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCt                                                             >  2:883681/1‑136 (MQ=255)                                                                     atatggatagaactgatcgaaaaatccttgtcgagctgcaaaatgacgggcgcctgtcgGAACGACGTACACCTCGTAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCTGGTCGTGCTGATGCtgt                                                           >  2:406‑M1/60‑136 (MQ=255)                                                                      ccGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCtgtg                                                          <  1:1113644/135‑1 (MQ=255)                                                                          ggTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGcc                                                      <  1:1099779/135‑1 (MQ=255)                                                                          cGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGcc                                                      <  1:20249/136‑1 (MQ=255)                                                                           gTGCTCCTGTTGGAGCTGGTGACAGATGCCGTTGGCGATGCGGCCCCGCGTCTGAACGTCGTACACCTCGAAGCGGAGGTTGCTCGCGCTTTCCTCGCCTTCGTCTTTCGACTTGTAGTGCTTTTGCTGTGGGCCg                                                     <  1:720110/136‑1 (MQ=255)                                                                            tGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGTCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCgg                                                    >  1:242885/1‑136 (MQ=255)                                                                             gCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGa                                                   >  2:542512/1‑136 (MQ=255)                                                                             gCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGa                                                   >  2:994437/1‑136 (MQ=255)                                                                             gCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGa                                                   >  1:26478/1‑136 (MQ=255)                                                                             gCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGa                                                   >  1:607954/1‑136 (MQ=255)                                                                             gCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCAAGGTCGTGCTGATGCTGTGCGCCGGa                                                   >  1:644028/1‑136 (MQ=255)                                                                               tCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAAt                                                 <  2:555839/136‑1 (MQ=255)                                                                                ccTGATGGAGATGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTAGCCAGGTCGTGCTGATGCTGTGCGCCGGAATg                                                >  1:144560/1‑136 (MQ=255)                                                                                          cTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGTTGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCg                                      <  2:138781/136‑1 (MQ=255)                                                                                            ggTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGAc                                    >  2:945713/1‑136 (MQ=255)                                                                                            ggTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGAc                                    >  2:33803/1‑136 (MQ=255)                                                                                             gTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCa                                           >  2:937598/1‑128 (MQ=255)                                                                                             gTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCa                                           <  1:937598/128‑1 (MQ=255)                                                                                              tCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCt                                  <  2:607954/136‑1 (MQ=255)                                                                                                aCCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGt                                >  2:977291/1‑136 (MQ=255)                                                                                                 ccgatgccgatgGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTc                               <  2:654666/136‑1 (MQ=255)                                                                                                 ccgatgccgatgGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTc                               >  1:557349/1‑136 (MQ=255)                                                                                                      gccgatgGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTCCGAGt                          <  2:255441/136‑1 (MQ=255)                                                                                                              cGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTCCGAGTTCAACGtg                  <  2:207672/136‑1 (MQ=255)                                                                                                               gATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTCCGAGTTCAACGtgc                 >  2:617069/1‑136 (MQ=255)                                                                                                                aTGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTCCGAGTTCAACGtgct                <  1:658746/136‑1 (MQ=255)                                                                                                                aTGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTCCGAGTTCAACGtgct                <  2:836630/136‑1 (MQ=255)                                                                                                                  gCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTCCGAGTTCAACGtgctgc              <  2:304357/136‑1 (MQ=255)                                                                                                                    ggCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTCCGAGTTCAACGTGCTGCTc            >  1:847931/1‑136 (MQ=255)                                                                                                                           cggcgGAACGACGTACACCTCGACGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCGGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTCCGAGTTCAACGTGCTGCTCGGCCCgg     >  2:845220‑M1/6‑136 (MQ=255)                                                                                                                              cTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTCCGAGTTCAACGTGCTGCTCGGCCCGGACg  >  2:276963/1‑136 (MQ=255)                                                                                                                                |                                                                                                                                      CCGAAGTGGCAGCGCTGTTCCGTTTGGCCGCCGCAGGTGTGAGGGTGCCCAAGCCTTACGACTTCCAGGACGGCGTGCTCCTGATGGAGCTGGTCACCGATGCCGATGGCGATGCGGCCCCGCGGCTGAACGACGTACACCTCGAAGCGGAGGATGCCCGCGCGTTCCACGCCTTCGTCATTCGCCAGGTCGTGCTGATGCTGTGCGCCGGAATGGTGCATGGCGACCTGTCCGAGTTCAACGTGCTGCTCGGCCCGGACG  >  NC_002947/3314008‑3314268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.