New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2306946 =	57 (1.080)	3 (0.060)	3/264	3.7	4.7%	coding (1576/1719 nt)	PP_2028	TPR repeat‑containing protein
	?	NC_002947	= 4018882	65 (1.230)					coding (818/1410 nt)	PP_3544	GntR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCCGGCCCAAGGCACACCCGGCGACGACCAACAGGCCAGCCCCGAACAACCCGGCGAAAGCAGCAGCAACAGCCAGGCCGCCCCCGGCAACCAGGCCGGGAGCGACGACAGTGTCATCCAGCCGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2307073‑2306946 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCGCCAGCAACTCCACCATGGCCTGTTTCTTGGCCTCCGGCATGCTTGCACCCACCGG  <  NC_002947/4018882‑4018824                                                                                                                                                                                             CCCGGCCCAAGGCACACCCGGCGACGACCAACAGGCCAGCCCCGAACAACCCGGCGAAAGCAGCAGCAACAGCCAGGCCGCCCCCGGCAACCAGGCCGGGAGCGACGACAGTGTCATCCAGCCGCCACCGCGCCcg                                                     >  1:42592/1‑134                                                                                GCCCCCGGCAACCAGGCCGGGAGCGACGACAGTGTCATCCAGCCGCCACCGCGCCAGCAACTCCACCATGGCCTGTTTCTTGGCCTCCGGCATGCTTGCACCCACCGG  <  1:1276679/108‑1                                                                                GCCCCCGGCAACCAGGCCGGGAGCGACGACAGTGTCATCCAGCCGCCACCGCGCCAGCAACTCCACCATGGCCTGTTTCTTGGCCTCCGGCATGCTTGCACCCACCGG  >  2:1276679/1‑108                                                                                                                                                                                             CCCGGCCCAAGGCACACCCGGCGACGACCAACAGGCCAGCCCCGAACAACCCGGCGAAAGCAGCAGCAACAGCCAGGCCGCCCCCGGCAACCAGGCCGGGAGCGACGACAGTGTCATCCAGCCGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2307073‑2306946 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCGCCAGCAACTCCACCATGGCCTGTTTCTTGGCCTCCGGCATGCTTGCACCCACCGG  <  NC_002947/4018882‑4018824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.