New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2306946 =	57 (1.080)	3 (0.060)	3/264	3.7	4.7%	coding (1576/1719 nt)	PP_2028	TPR repeat‑containing protein
	?	NC_002947	= 4018882	65 (1.230)					coding (818/1410 nt)	PP_3544	GntR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTCCTGATGCAATTGCTGTTCATACCAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGGTGTGCCTTGGGCCGGGCTGCT  >  NC_002947/2306814‑2307078                                                                                                                                     |                                                                                                                                     tttCCTGATGCAATTGCTGTTCATACCAGAATTTGCGTCGCAGCAGCTCTGGCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTgg                                                                                                                                   <  1:162072/136‑1 (MQ=255) tttCCTGATGCAATTGCTGTTCATACCAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTgg                                                                                                                                   <  1:1318506/136‑1 (MQ=255)       gATGCAATTGCTGTTCATACCAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTg                                                                                                                             <  1:436491/136‑1 (MQ=255)           cAATTGCTGTTCATACCAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATg                                                                                                                         <  2:1314378/136‑1 (MQ=255)           cAATTGCTGTTCATACCAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATg                                                                                                                         >  2:65525/1‑136 (MQ=255)           cAATTGCTGTTCATACCAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATg                                                                                                                         <  2:802060/136‑1 (MQ=255)                 cggTTCATACCAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTg                                                                                                                   <  1:682299/134‑1 (MQ=255)                 cTGTTCATACCAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTg                                                                                                                   >  1:418406/1‑136 (MQ=255)                  tGTTCATACCAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTgt                                                                                                                  <  1:228411/136‑1 (MQ=255)                       aTACCAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCAATCAGCCATTGCTCCAGGGCTTGGCGATGTTCGACGTCGAGGCTGGACGACACCGGGCGCTGTGGCGGCTGGATGACACTGtcgtcg                                                                                                             >  1:867862/1‑136 (MQ=255)                          ccAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTc                                                                                                          <  1:362302/136‑1 (MQ=255)                           cAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTcc                                                                                                         <  1:1096215/136‑1 (MQ=255)                            aGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTAGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCAccc                                                                                                        >  2:1010184/1‑136 (MQ=255)                             gAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCg                                                                                                       >  1:1163335/1‑136 (MQ=255)                                              gcTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGggc                                                                                      <  1:198376/136‑1 (MQ=255)                                              gcTCTGCCGGGGTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGggc                                                                                      <  2:923723/136‑1 (MQ=255)                                                           gTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTtg                                                                         <  2:827457/136‑1 (MQ=255)                                                               gggATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTtgctgc                                                                     >  2:40489/1‑136 (MQ=255)                                                                     ccccGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCttt                                                               <  1:1246995/135‑1 (MQ=255)                                                                      cccGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTc                                                              >  1:937755/1‑136 (MQ=255)                                                                       ccGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTTCTGCTTTCg                                                             >  2:544833/1‑136 (MQ=255)                                                                         gCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGcc                                                           <  1:44820/136‑1 (MQ=255)                                                                              cATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGTGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGAGACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTTGCTGTTGCTGCTGCTTTCGCCGGgtt                                                      <  1:929536/136‑1 (MQ=255)                                                                              cATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGGGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGgtt                                                      <  1:534818/136‑1 (MQ=255)                                                                              cATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGgtt                                                      <  2:1262461/136‑1 (MQ=255)                                                                              cATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGgtt                                                      <  2:799852/136‑1 (MQ=255)                                                                              cATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGCTGCTGCTGCTTTCGCCGGgtt                                                      <  1:452980/136‑1 (MQ=255)                                                                                           cTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTggg                                         >  1:934444/1‑135 (MQ=255)                                                                                                cgcTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGgttg                                                     >  1:6423/1‑119 (MQ=255)                                                                                                cgcTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGgttg                                                     <  2:6423/119‑1 (MQ=255)                                                                                                cgcTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGtt                                    >  1:763857/1‑136 (MQ=255)                                                                                                cgcTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGtt                                    >  2:971629/1‑136 (MQ=255)                                                                                                 gcTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGc                                                                              <  2:482701/93‑1 (MQ=255)                                                                                                 gcTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGc                                                                              >  1:482701/1‑93 (MQ=255)                                                                                                 gcTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTg                                   >  2:989096/1‑136 (MQ=255)                                                                                                 gcTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTg                                   >  1:839288/1‑136 (MQ=255)                                                                                                 gcTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGGTGTTCGGGGCTGGCCTGTTg                                   >  1:201765/1‑136 (MQ=255)                                                                                                 gcTGTGCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTg                                   <  2:1269224/136‑1 (MQ=255)                                                                                                    gTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGgtc                                <  1:40489/136‑1 (MQ=255)                                                                                                     ttCGCCGTCGAGGCTGGGCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGgtcg                               <  1:1237395/136‑1 (MQ=255)                                                                                                       cGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGgtcgtg                             >  1:114115/1‑135 (MQ=255)                                                                                                           ggcGAGGCTGGTCGTCACCGGGCGCTGTGGCGGCTGGTTGACTCTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGATGCTTTCGCCGTGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCg                         <  1:615818/134‑1 (MQ=255)                                                                                                           ggcGAGGCTGGTCAACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTCGTCGTCGCCg                         <  2:1242643/134‑1 (MQ=255)                                                                                                           gTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCg                         <  1:468582/136‑1 (MQ=255)                                                                                                           gTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCg                         <  2:1319670/136‑1 (MQ=255)                                                                                                                ggCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGgtgt                    >  2:38038/1‑136 (MQ=255)                                                                                                                         acacCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGGTGTGCGTTGGGc           >  2:299881/1‑136 (MQ=255)                                                                                                                         acacCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGGTGTGCCTTGGGc           >  2:674342/1‑136 (MQ=255)                                                                                                                         acacCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGGTGTGCCTTGGGc           >  2:1340987/1‑136 (MQ=255)                                                                                                                         acacCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCAGGCCTGTTGGTCGTCGCCGGGTGTGCCTTGGGc           >  2:456326/1‑136 (MQ=255)                                                                                                                         acacCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCCGCCAGGTTGCCGGGGGCGGCCTGGCAGTTGCTGCTGCTTTCGACGGGGTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGGTGTGCCTTGGGc           >  2:284348/1‑136 (MQ=255)                                                                                                                          cacCGGGCGCGGTGGCGGCTGGATGACACGGGCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGGTGTGCCTTGGGcc          <  1:197070/136‑1 (MQ=255)                                                                                                                             cGGGCGCGGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGGTGTGCCTTGGGCCggg       <  1:42592/136‑1 (MQ=255)                                                                                                                                 cgcTGTGGCGGCTGGATGACTCTGTCGTCGCTCCCGGCCTGGTGGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGGTGTGCCTTGGGCCGGgctgc   <  1:1106748/136‑1 (MQ=255)                                                                                                                                 cgcTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGGTGTGCCTTGGGCCGGgctgc   <  2:1163335/136‑1 (MQ=255)                                                                                                                                  gcTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGGTGTGCCTTGGGCCGGgctgct  >  2:353790/1‑136 (MQ=255)                                                                                                                                  gcTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGGTGTGCCTTGGGCCGGgctgct  >  2:884696/1‑136 (MQ=255)                                                                                                                                  gcTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCAGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCGGTTGGTCGTCGCCGGGTGTGCCTTGGGCCGGgctgct  >  1:1348621/1‑136 (MQ=255)                                                                                                                                     |                                                                                                                                     TTTCCTGATGCAATTGCTGTTCATACCAGAATTTGCGTCGCAGCAGCTCTGCCGGGTTGTCGGGGATTTCCCGCAGCCATTGCTCCAGGGCTTGGCGCTGTTCGCCGTCGAGGCTGGTCGACACCGGGCGCTGTGGCGGCTGGATGACACTGTCGTCGCTCCCGGCCTGGTTGCCGGGGGCGGCCTGGCTGTTGCTGCTGCTTTCGCCGGGTTGTTCGGGGCTGGCCTGTTGGTCGTCGCCGGGTGTGCCTTGGGCCGGGCTGCT  >  NC_002947/2306814‑2307078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.