| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 486415 = | 80 (0.490) | 11 (0.080) | 6/236 | NT | 10.4% | intergenic (‑98/+100) | apaG/rsmA | Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A |
| ? | NC_002947 | 486504 = | 119 (0.820) | intergenic (‑187/+11) | apaG/rsmA | Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A | |||||
ACAGCTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/486578‑486415‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaagaggccggTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGC > NC_002947/486504‑486651 ACAGCTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACC < 1:1865428/150‑1ACAGCTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACC < 1:2653916/150‑1 cgCGACCTGGCAGCCTTCGTGCGCCGGGCTGACCAACGGGCGGATCAGCCACCAGCCTGATGTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCG < 2:4265639/148‑1 CTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCG > 2:3300093/1‑150 CTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCG > 2:574374/1‑150 TCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGA > 2:1275235/1‑150 CGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAA < 1:2949617/150‑1 CGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAA < 1:2949763/150‑1 GACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAG < 2:5190026/150‑1 GGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCC > 1:4939776/1‑150 GCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCG > 2:4752142/1‑150 GCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCG > 1:1561954/1‑150 TGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAA < 2:1349057/123‑1 TGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAA > 1:1349057/1‑123 GACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCG < 1:2634175/129‑1 GACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCG > 2:2634175/1‑129 CCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGC > 2:122889/1‑86 CCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGC < 1:122889/86‑1 CTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGG > 2:2242190/1‑150 CTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCGTGTAGGAGCGGGGTTACCCGCGACGAGGCCGGTACGGGCTCAATCCGGCGTGGTGCTGATCCGCCCGGTGGTCAGCCCGGCGCACGACGGCTGCCGGG > 2:2861093/1‑150 CTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTC > 1:4123487/1‑150 TTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCG > 1:5261218/1‑150 TTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCG > 1:5261195/1‑150 TTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCG > 1:1683589/1‑150 TTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGA < 2:4822598/75‑1 TTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGA > 1:4822598/1‑75 GATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCATGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCA > 2:5036358/1‑150 GATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCA > 1:527845/1‑150 CCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGAT > 2:5075146/1‑150 GGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCA > 1:4610455/1‑150 GGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCA > 1:4610544/1‑150 CCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCT > 1:5197413/1‑150 CCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCT > 1:3235386/1‑150 CCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCT > 2:2613371/1‑150 CCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTC < 1:4882575/83‑1 CCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTC > 2:4882575/1‑83 GCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTT > 2:2330725/1‑150 GCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTT < 2:2884758/150‑1 GCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTT < 2:2885359/150‑1 CGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTC < 2:2087991/150‑1 AAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGACTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCAT < 2:651596/150‑1 AGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATG < 1:4702683/150‑1 AGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATG < 1:448321/150‑1 AGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATG < 2:1179675/150‑1 AGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATG < 1:3229185/150‑1 GGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTG < 2:4072633/150‑1 GCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGT > 1:3534101/1‑150 GCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGT > 1:5104175/1‑150 GCCGGTACGGGCTAAATCAGGATTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGT < 1:119966/150‑1 CGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTG > 2:1223939/1‑150 CGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGG > 1:1986699/1‑84 CGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGG < 2:1986699/84‑1 GGTACGGGCTAAATCAGGCTTGGTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGC < 1:4861623/150‑1 ACAGCTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/486578‑486415‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaagaggccggTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGC > NC_002947/486504‑486651 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |