| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 655945 | 184 (1.120) | 11 (0.070) | 9/262 | NT | 6.0% | coding (401/1356 nt) | PP_0563 | two‑component system response regulator |
| ? | NC_002947 | = 655976 | 167 (1.040) | coding (370/1356 nt) | PP_0563 | two‑component system response regulator | |||||
GCGCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/655795‑655945‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGACTTTCTCACCGGCAGTCTGGAAGCTTCCAGCCTGCTGGAAAAGGTCGAACTGCTGACCAACACCGCCCCTCACGACCCGTTGCGCGTGCTGATCATCGACGATTCGCGCACAC < NC_002947/655976‑655829 GCGCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGTAAGCTTCCAGACTGCCGGTGAGAAAGTCC < 1:4427902/150‑1GCGCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCC < 2:966993/150‑1GCGCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCC < 2:2630459/150‑1 CGCCGGCCAGTACACGCTCGGTTTACATGGCCTGTGTGCGCTAATCGTCGTTTATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACATTTTCCAGCTGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCT < 1:1238411/150‑1 CGCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCACCGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCT < 1:1238546/150‑1 CGCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCT < 2:2444893/150‑1 CGCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCT < 2:4570140/150‑1 CTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTC > 2:5419617/1‑150 gttTGCGCGAATCGTCGATGATCAGAACGCGCATCGGGTCGTGTGGGGGGTTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGGTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAG < 1:5378451/147‑1 GTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAG < 1:5378428/150‑1 TCGTCGTTGATCAGCACGCGCACCGGGTCGTGCGGGGCGGTGTTGGTCAGCAGTTCGACCTTTCCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGACTTTCTCAC < 1:5049139/150‑1 TCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGACTTTCTCACCGG < 1:5419617/150‑1 GCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGCGAGAAAGTCCTGACCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGG > 2:1744446/1‑127 GCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGAGAGAAAGTCCTGACCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGG < 1:1744446/127‑1 GGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGA < 2:2185822/116‑1 GGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGA > 1:2185822/1‑116 GACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAG > 1:945822/1‑83 GACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAG < 2:945822/83‑1 CCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGACTTTCTCACCGGCAGTCTGGAAGCTTACAGCCTGCTGGAAAAGGTCGAACTGCTGACCAACACCGCCCCGCACGACCCGTTGCGCGGGCTGATCATCGACGATTCGCGCccc > 1:3293876/1‑147 CTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGACTTTCTCACCGGCAGTCTGGAAGCTTCCAGCCTGCTGGAAAAGGTGGAACTGCTGACCAACACCGCCCCTCACCACCCGGTGCGCGTGCTGATCATCGACGAGTCGCGCCCAC > 1:2296372/1‑150 CTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGACTTTCTCACCGGCAGTCGGGAAGCTTCCAGCCTGCTGGAAAAGGTCGAACAGCTGACCAACACCGCCCCGCACGACCCCTTGCGCGGGCTGATCATCGACGATTCGCGCACAC > 1:2296430/1‑150 GCGCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/655795‑655945‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGACTTTCTCACCGGCAGTCTGGAAGCTTCCAGCCTGCTGGAAAAGGTCGAACTGCTGACCAACACCGCCCCTCACGACCCGTTGCGCGTGCTGATCATCGACGATTCGCGCACAC < NC_002947/655976‑655829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |