New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 655945184 (1.120)11 (0.070) 9/262 NT 6.0% coding (401/1356 nt) PP_0563 two‑component system response regulator
?NC_002947 = 655976 167 (1.040)coding (370/1356 nt) PP_0563 two‑component system response regulator

Only 100 of 203 total aligned reads displayed.

GTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGACGGCGGGTACTCGCTGATC  >  NC_002947/655829‑656124
                                                                                                                                                   |                                                                                                                                                    
gtgtgCGCGAATCGTCGATGATCAGCCCGCGCAAGGGGTCGTGCGGGGCGGTGTTGGTCAGCTGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCCGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTag                                                                                                                                                    >  1:2296430‑M2/1‑148 (MQ=255)
  gtgCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAggg                                                                                                                                                  <  1:4944668/150‑1 (MQ=255)
  gtgCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAggg                                                                                                                                                  <  2:2999945/150‑1 (MQ=255)
  gtgCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTGTCCAGCAGGCTGGAAGCTGCCAGACTGCCGGTGAGAACGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAggg                                                                                                                                                  <  2:3859109/150‑1 (MQ=255)
   tgCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAgggg                                                                                                                                                 <  2:3176365/150‑1 (MQ=255)
   ggcgcGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGCGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAgggg                                                                                                                                                 <  1:3332989/149‑1 (MQ=255)
    gcgcGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGgt                                                                                                                                                >  1:2482107/1‑150 (MQ=255)
      gcgAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGgtgt                                                                                                                                              >  2:3658568/1‑150 (MQ=255)
      gcgAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGgtgt                                                                                                                                              <  2:1224611/150‑1 (MQ=255)
       cgAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCTGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTc                                                                                                                                             <  2:5369344/150‑1 (MQ=255)
            cgtcgATGATCAGCACGCGCAACGGTTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCtt                                                                                                                                        <  2:659172/150‑1 (MQ=255)
                gatgatCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTg                                                                                                                                    >  2:5439494/1‑150 (MQ=255)
                 atgatCCGCACGCGCACCGGGTCGTGTGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGa                                                                                                                                   <  1:2027856/150‑1 (MQ=255)
                    atCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATgg                                                                                                                                <  2:2532001/150‑1 (MQ=255)
                    atCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATgg                                                                                                                                <  2:3390236/150‑1 (MQ=255)
                     tCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGc                                                                                                                               >  2:1463698/1‑150 (MQ=255)
                          aCGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTgaag                                                                                                                          <  1:1701092/150‑1 (MQ=255)
                           cgcgCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTgaaga                                                                                                                         >  1:2773971/1‑150 (MQ=255)
                            gcgcAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTgaagac                                                                                                                        >  2:963440/1‑149 (MQ=255)
                            gcgcAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTgaagaa                                                                                                                        >  2:1403716/1‑150 (MQ=255)
                             cgcACCGGGTCGTGAGGGGCGGTGTTGGTCCGCAGTTCGACCTTTTCCCGCAGGGTTGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAAc                                                                                                                       <  1:3127168/150‑1 (MQ=255)
                             cgcAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAAc                                                                                                                       <  2:409275/150‑1 (MQ=255)
                              gcAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACa                                                                                                                      >  2:3147064/1‑150 (MQ=255)
                                accGGGGCGTGAGGGGGGGTGTTGGTCAGCCGTTCGACCTTTTCCAGCAGGCTGGACGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGc                                                                                                                    <  1:906652/148‑1 (MQ=255)
                                      tCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTGTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGa                                                                                                              <  2:2852329/150‑1 (MQ=255)
                                        gtgtGGGGGGGTGTTGGTCAGCTGTTCGACCTTTTCCAGCCGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAAt                                                                                                            <  1:5048173/150‑1 (MQ=255)
                                        gTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAAt                                                                                                            >  1:599245/1‑150 (MQ=255)
                                        gTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAAt                                                                                                            >  1:4258129/1‑150 (MQ=255)
                                             gggCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGc                                                                                                       >  1:5212909/1‑150 (MQ=255)
                                             gggCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGc                                                                                                       >  2:1876629/1‑150 (MQ=255)
                                               gCGGTGTTGGTCAGCAGTTCGACCTTTTCCCGCAGGCTGGATGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGt                                                                                                     <  1:2268055/150‑1 (MQ=255)
                                               gCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGt                                                                                                     >  2:4996544/1‑150 (MQ=255)
                                                cGGTGTTGGTCAGCAGTTCGACCTTTTCCCGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTg                                                                                                    <  1:3537273/150‑1 (MQ=255)
                                                cGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTg                                                                                                    >  1:1336497/1‑150 (MQ=255)
                                                  gtgtTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGTACAGCAACGGAATGGAGCGTGcc                                                                                                  >  2:841861/1‑150 (MQ=255)
                                                  gtgtTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGcc                                                                                                  >  1:4087097/1‑150 (MQ=255)
                                                   tgtTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCa                                                                                                 <  2:2471026/150‑1 (MQ=255)
                                                     ttGTTCAGCATTTCGACCTTTCCCAGCAGGCTGTAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAgg                                                                                               <  1:986435/150‑1 (MQ=255)
                                                      tGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGc                                                                                              <  2:2334841/150‑1 (MQ=255)
                                                        gTCAGCAGTTCGACCTTTTCCAGCAGGAT‑GAAGCTTCCAGACTGACGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCAct                                                                                           >  2:4633491/1‑150 (MQ=255)
                                                            gcagTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCctgct                                                                                        >  1:335924/1‑150 (MQ=255)
                                                               gTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCa                                                                                     >  1:2108032/1‑150 (MQ=255)
                                                                ttCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACa                                                                                                                      >  2:899866/1‑116 (MQ=255)
                                                                ttCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCAc                                                                                    >  1:4624001/1‑150 (MQ=255)
                                                                 tCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCAcc                                                                                   <  2:1336497/150‑1 (MQ=255)
                                                                 tCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCAcc                                                                                   >  1:760034/1‑150 (MQ=255)
                                                                   gACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTg                                                                                 >  1:1809902/1‑150 (MQ=255)
                                                                   gACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTg                                                                                 >  1:1226980/1‑150 (MQ=255)
                                                                    aCCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGa                                                                                >  1:185676/1‑150 (MQ=255)
                                                                      cTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGc                                                                              >  1:1605271/1‑150 (MQ=255)
                                                                       ttttCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCg                                                                             >  1:1665399/1‑150 (MQ=255)
                                                                       ttttCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCg                                                                             >  2:117113/1‑150 (MQ=255)
                                                                            cggcagTCTGGAAGCTTCCAGCCTGCTGGTGAGAAAGTCCTGGCCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCcag                                                                        >  2:4591210/3‑150 (MQ=255)
                                                                            cagcagGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCGGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCcag                                                                        <  2:3946050/150‑1 (MQ=255)
                                                                              gcagGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGACTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCcagca                                                                      <  2:4977183/150‑1 (MQ=255)
                                                                                agGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCagcagc                                                                    >  2:610185/1‑150 (MQ=255)
                                                                                  gcgggAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCaa                                                                  <  1:1601924/147‑1 (MQ=255)
                                                                                    tGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCcagca                                                                      >  2:3411409/1‑144 (MQ=255)
                                                                                    tGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCcagca                                                                      <  1:3411409/144‑1 (MQ=255)
                                                                                    tGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGc                                                                >  1:1428673/1‑150 (MQ=255)
                                                                                           ttCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGcc                                                         >  2:3069630/1‑150 (MQ=255)
                                                                                           ttCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCCGCACCTGAGCGGCCAGCAGCAAGCCCAGGcc                                                         >  2:1450906/1‑150 (MQ=255)
                                                                                            tCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCg                                                        >  1:3574111/1‑150 (MQ=255)
                                                                                            tCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCg                                                        >  2:3258967/1‑150 (MQ=255)
                                                                                                gACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGTGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGgcgc                                                    <  1:4237732/150‑1 (MQ=255)
                                                                                                 aCTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTgaa                                                                                                                           <  2:356236/78‑1 (MQ=255)
                                                                                                    gCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAgg                                                           >  2:4781338/1‑139 (MQ=255)
                                                                                                        gTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTaggactttctcaccggcagtctggaagcttccagcctgctgggaaaggtcgaactgctgaccaacaccgccccgcacgacccggtgcgcgtgctgatcaacgacga                                            <  1:5049139‑M2/150‑107 (MQ=255)
                                                                                                        gTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAg                                            >  2:4439083/1‑150 (MQ=255)
                                                                                                          gagaAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTc                                          >  1:1374665/1‑150 (MQ=255)
                                                                                                            gaAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAAc                                                                                                                       <  2:4387176/71‑1 (MQ=255)
                                                                                                            gaAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAAc                                                                                                                       >  1:4387176/1‑71 (MQ=255)
                                                                                                            gaAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGa                                        >  1:3078203/1‑150 (MQ=255)
                                                                                                             aaaGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCg                                                                             <  2:4251805/112‑1 (MQ=255)
                                                                                                             aaaGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGAc                                       >  1:3733663/1‑150 (MQ=255)
                                                                                                             aaaGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGAc                                       >  2:3920896/1‑150 (MQ=255)
                                                                                                               ccgccTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACAt                                     >  1:1098622/4‑150 (MQ=255)
                                                                                                                 tCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTaggactttctcaccggcagtctggaagcttccagcctgctggaaaaggtcgaactgctgaccaacaccgcccctcacgacc                                                                     <  2:2185822‑M2/116‑82 (MQ=255)
                                                                                                                  ccTGACCGCCGGCGCGCACTGCGGCAAGGCGGTCaggactttctctccggcagtctggaagcttccagcctgctggaaaaggtcgaactgctgaccaacaccgcccctcacgacccgttgcgcgtgc                                                         <  1:1744446‑M2/127‑94 (MQ=255)
                                                                                                                  ccTGACCGCCGGCGCGCACTGCGGCAAGGCGGTCaggactttctcgccggcagtctggaagcttccagcctgctggaaaaggtcgaactgctgaccaacaccgcccctcacgacccgttgcgcgtgc                                                         >  2:1744446‑M2/1‑34 (MQ=255)
                                                                                                                   cTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTaggactttctcaccggcagtctggaagcttccagcctgctggaaaaggtc                                                                                                    >  1:945822‑M2/1‑33 (MQ=255)
                                                                                                                   cTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTaggactttctcaccggcagtctggaagcttccaccctgctggaaaaggtcgaactgctgaccaacaaccccccacacgacccgatgcgcgttctgatcatcgacgattcgcgcaaac                                 <  1:5378451‑M2/150‑118 (MQ=255)
                                                                                                                   cTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCat                                 >  2:1524725/1‑150 (MQ=255)
                                                                                                                     gACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCatga                               <  1:1522187/150‑1 (MQ=255)
                                                                                                                      aCCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCat                                 <  2:2893628/147‑1 (MQ=255)
                                                                                                                      aCCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCat                                 >  1:2893628/1‑147 (MQ=255)
                                                                                                                         gccgGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGTAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCatgatgat                           >  2:3594919/1‑150 (MQ=255)
                                                                                                                          ccgGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGa                                                                                                         <  1:3847683/71‑1 (MQ=255)
                                                                                                                           cgGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATgg                         <  2:1681810/150‑1 (MQ=255)
                                                                                                                             gcgcgcACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGcc                       <  1:2438715/150‑1 (MQ=255)
                                                                                                                               gcgcACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCcagc                                                                       <  1:1161977/100‑1 (MQ=255)
                                                                                                                                 gcACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCatgatg                             <  2:5063511/140‑1 (MQ=255)
                                                                                                                                 gcACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGAcg                   <  2:3846398/150‑1 (MQ=255)
                                                                                                                                 gcACGGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGACCAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGAcg                   <  1:3277503/150‑1 (MQ=255)
                                                                                                                                     tGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGAcggcgg               <  1:1027004/150‑1 (MQ=255)
                                                                                                                                              gCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGACGGCGGGTACTCGCt      >  1:468424/1‑150 (MQ=255)
                                                                                                                                               cGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGACGGCGGGTACTCGCTg     <  1:1403716/150‑1 (MQ=255)
                                                                                                                                                  gTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGACGGCGGGTACTCGCTGATc  >  1:3928178/1‑150 (MQ=255)
                                                                                                                                                  gTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGACGGCGGGTACTCGCTGATc  <  1:2283140/150‑1 (MQ=255)
                                                                                                                                                  gTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGACGGCGGGTACTCGCTGATc  <  2:3333598/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
GTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGACGGCGGGTACTCGCTGATC  >  NC_002947/655829‑656124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.