| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 742614 | NA (NA) | 4 (0.030) | 3/258 | NT | NA | coding (712/1422 nt) | PP_0635 | group II intron‑encoding maturase |
| ? | NC_002947 | = 742645 | NA (NA) | coding (743/1422 nt) | PP_0635 | group II intron‑encoding maturase | |||||
GTGGAAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/742461‑742614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTT < NC_002947/742645‑742497 GTGGAAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAGCCCA > 2:5122338/1‑150GTGGAAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAGCCCA > 1:3301415/1‑150GTGGAAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAGCCCA > 1:698539/1‑150GTGGAAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAGCCCA > 1:653589/1‑150 GGAAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAGCCCACG > 2:4620234/1‑150 GGAAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAGCCCACG > 2:5200293/1‑150 GAAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAGCCCACGG > 2:3875366/1‑150 AAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGAGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAGCCCACGGC < 2:4089605/150‑1 AGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTC < 1:3875366/150‑1 CGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGAGCAGGATATTCGACAG‑CAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATC < 2:4384703/150‑1 GTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGAGCAGGATATTCGACAG‑CAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTA < 1:4372734/150‑1 GTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCAGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACGTATCTTTGACCCGGCGCTCGATACAGGCCATCAG > 1:4126843/1‑150 ACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGT < 2:419735/150‑1 ACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGT < 2:919312/150‑1 ACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGT < 1:3802703/150‑1 ACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGT < 1:862449/150‑1 ACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGT < 1:963960/150‑1 ACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAA < 2:329208/90‑1 ACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAA > 1:329208/1‑90 CGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTG < 2:1294990/150‑1 CGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTG < 1:1553956/150‑1 CGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTG < 1:2545687/150‑1 CGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTG < 2:3231173/150‑1 CGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTG < 1:2545736/150‑1 CGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTG < 1:3404281/150‑1 CGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTG < 2:663654/150‑1 GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGG > 2:2238932/1‑150 GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGG < 1:4002698/150‑1 GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGG < 2:5294576/150‑1 GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGG < 2:5449254/150‑1 GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGG > 1:482460/1‑150 GCGAAAGGGGGGCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATACGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGT < 2:2861004/150‑1 GCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGT < 2:1212331/150‑1 GCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGT < 2:4068052/150‑1 GCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGT < 1:1128044/150‑1 GCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGT > 1:1275275/1‑150 GCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTGATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGT < 2:2861021/150‑1 CGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTT < 2:2958807/150‑1 CGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTT < 2:1204759/150‑1 CGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTT < 1:459459/150‑1 GTGGAAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/742461‑742614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTT < NC_002947/742645‑742497 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |