New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 742614 | NA (NA) | 4 (0.030) | 3/258 | NT | NA | coding (712/1422 nt) | PP_0635 | group II intron‑encoding maturase |
? | NC_002947 | = 742645 | NA (NA) | coding (743/1422 nt) | PP_0635 | group II intron‑encoding maturase |
ATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTTGCTGTCGAATATCCTGCTC > NC_002947/742521‑742670 | attgAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTTGCTGTCGAATATCCTGCTc < 1:3230552/147‑1 (MQ=1) | ATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTTGCTGTCGAATATCCTGCTC > NC_002947/742521‑742670 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |